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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1592 1593 1594 1595 1596 1597 1598 1599 1600 ... 1720 1721 » 79751-79800 / 86044 show all
ltrigg-rtg1	SNP	*	HG002complexvar	*	99.8490	99.7395	99.9587	18.9301	752419	1965	752595	311	136	43.7299
rpoplin-dv42	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.8491	99.8406	99.8576	65.2848	17540	28	17527	25	17	68.0000
egarrison-hhga	SNP	*	map_l100_m2_e0	homalt	99.8491	99.7675	99.9309	63.4300	27459	64	27459	19	18	94.7368
raldana-dualsentieon	INDEL	D1_5	HG002complexvar	homalt	99.8492	99.9151	99.7834	59.8813	10589	9	10594	23	21	91.3043
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8493	99.7241	99.9749	34.2862	3976	11	3976	1	1	100.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8494	99.6992	100.0000	33.0461	1326	4	1321	0	0
raldana-dualsentieon	SNP	tv	map_l100_m2_e1	homalt	99.8494	99.7635	99.9354	60.9109	9280	22	9280	6	3	50.0000
dgrover-gatk	SNP	tv	func_cds	het	99.8496	99.9624	99.7370	32.6247	2656	1	2655	7	0	0.0000
eyeh-varpipe	SNP	*	map_l125_m1_e0	homalt	99.8501	99.8107	99.8895	68.7779	16873	32	16269	18	10	55.5556
ltrigg-rtg2	SNP	ti	HG002complexvar	het	99.8501	99.7528	99.9475	16.9710	313988	778	313992	165	46	27.8788
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8503	99.8005	99.9001	62.4759	7005	14	7001	7	3	42.8571
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8504	99.8290	99.8718	59.4899	7007	12	7011	9	6	66.6667
ltrigg-rtg2	SNP	ti	*	het	99.8504	99.8647	99.8361	15.7716	1280159	1735	1280167	2101	75	3.5697
egarrison-hhga	SNP	*	map_l100_m2_e1	homalt	99.8506	99.7698	99.9315	63.4220	27732	64	27732	19	18	94.7368
eyeh-varpipe	SNP	ti	map_l100_m0_e0	homalt	99.8506	99.8328	99.8684	64.9624	7761	13	7590	10	5	50.0000
hfeng-pmm2	SNP	tv	map_l100_m1_e0	homalt	99.8507	99.8562	99.8452	62.5538	9030	13	9030	14	5	35.7143
hfeng-pmm1	SNP	tv	map_l100_m1_e0	homalt	99.8507	99.8452	99.8562	62.4720	9029	14	9029	13	5	38.4615
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8508	99.7870	99.9147	58.6642	16394	35	16393	14	4	28.5714
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8509	99.8255	99.8764	47.5826	4004	7	4039	5	0	0.0000
hfeng-pmm3	SNP	ti	HG002complexvar	het	99.8511	99.7192	99.9834	16.8098	313882	884	313832	52	10	19.2308
jli-custom	SNP	*	map_siren	homalt	99.8512	99.7462	99.9564	49.8643	55016	140	55010	24	24	100.0000
bgallagher-sentieon	SNP	ti	HG002compoundhet	*	99.8512	99.8226	99.8798	35.5355	17447	31	17445	21	14	66.6667
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8513	99.7206	99.9825	55.1444	17129	48	17126	3	2	66.6667
ckim-vqsr	INDEL	I1_5	HG002complexvar	homalt	99.8514	99.8810	99.8217	52.9334	13432	16	13438	24	24	100.0000
ckim-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8514	99.7426	99.9603	49.3467	10076	26	10076	4	4	100.0000
jlack-gatk	SNP	*	HG002compoundhet	homalt	99.8516	99.8516	99.8515	34.5857	10766	16	10761	16	15	93.7500
hfeng-pmm3	SNP	*	map_l100_m1_e0	homalt	99.8518	99.8334	99.8703	60.8633	26958	45	26958	35	17	48.5714
ltrigg-rtg1	SNP	ti	map_siren	homalt	99.8522	99.7758	99.9287	51.0640	37831	85	37826	27	26	96.2963
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8524	100.0000	99.7052	73.0058	1353	0	1353	4	1	25.0000
bgallagher-sentieon	SNP	tv	HG002compoundhet	homalt	99.8524	99.9115	99.7933	42.7775	3385	3	3380	7	6	85.7143
ltrigg-rtg1	SNP	tv	map_l150_m2_e0	homalt	99.8529	99.7551	99.9509	72.6094	4073	10	4074	2	2	100.0000
ghariani-varprowl	SNP	ti	*	homalt	99.8530	99.9608	99.7455	17.9110	802720	315	802769	2048	1014	49.5117
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8531	99.8195	99.8867	58.0732	28209	51	28212	32	20	62.5000
qzeng-custom	SNP	tv	func_cds	homalt	99.8531	99.7066	100.0000	25.3758	1699	5	1688	0	0
raldana-dualsentieon	SNP	tv	*	het	99.8532	99.8447	99.8617	22.1748	590777	919	590703	818	22	2.6895
ltrigg-rtg1	SNP	ti	HG002complexvar	*	99.8532	99.7400	99.9667	17.5108	507114	1322	507034	169	80	47.3373
ltrigg-rtg1	SNP	tv	map_l100_m2_e0	homalt	99.8534	99.7829	99.9239	63.3991	9194	20	9193	7	4	57.1429
jpowers-varprowl	SNP	tv	func_cds	homalt	99.8535	100.0000	99.7074	29.3802	1704	0	1704	5	5	100.0000
hfeng-pmm1	SNP	tv	map_l100_m2_e0	homalt	99.8535	99.8481	99.8589	64.8359	9200	14	9200	13	5	38.4615
hfeng-pmm2	SNP	tv	map_l100_m2_e0	homalt	99.8535	99.8589	99.8481	64.9206	9201	13	9201	14	5	35.7143
bgallagher-sentieon	SNP	ti	map_siren	homalt	99.8535	99.7547	99.9524	48.7705	37823	93	37817	18	16	88.8889
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8537	99.7443	99.9634	30.7478	2731	7	2731	1	1	100.0000
jmaeng-gatk	INDEL	D1_5	HG002complexvar	homalt	99.8538	99.8679	99.8397	60.1891	10584	14	10591	17	15	88.2353
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8538	99.7443	99.9634	29.9590	2731	7	2732	1	1	100.0000
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8538	99.7443	99.9634	32.0149	2731	7	2732	1	0	0.0000
ckim-vqsr	INDEL	D1_5	HG002complexvar	homalt	99.8538	99.8585	99.8491	60.1802	10583	15	10590	16	14	87.5000
ltrigg-rtg1	SNP	ti	*	het	99.8539	99.8618	99.8460	16.3632	1280123	1771	1280140	1975	52	2.6329
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8540	99.7085	100.0000	50.1462	342	1	341	0	0
eyeh-varpipe	SNP	*	map_l125_m2_e0	homalt	99.8542	99.8158	99.8925	71.0277	17343	32	16728	18	10	55.5556
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8544	100.0000	99.7093	57.2671	343	0	343	1	0	0.0000

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