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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1591 1592 1593 1594 1595 1596 1597 1598 1599 ... 1720 1721 » 79701-79750 / 86044 show all
eyeh-varpipe	SNP	tv	map_l100_m1_e0	homalt	99.8444	99.8231	99.8658	65.0500	9027	16	8931	12	4	33.3333
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8444	99.6892	100.0000	52.3753	1604	5	1604	0	0
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8445	99.7514	99.9377	43.4109	1605	4	1605	1	1	100.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8445	99.7514	99.9377	43.6886	1605	4	1605	1	1	100.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8445	99.7514	99.9377	43.3110	1605	4	1605	1	1	100.0000
bgallagher-sentieon	INDEL	D1_5	HG002complexvar	homalt	99.8445	99.9151	99.7740	60.1815	10589	9	10594	24	22	91.6667
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.8448	99.7726	99.9172	69.6417	4826	11	4826	4	3	75.0000
cchapple-custom	SNP	*	*	*	99.8448	99.8832	99.8063	20.8246	3051052	3567	3049557	5917	726	12.2697
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.8449	99.8139	99.8759	69.1925	4828	9	4828	6	5	83.3333
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.8449	99.7933	99.8965	69.7243	4827	10	4827	5	3	60.0000
raldana-dualsentieon	SNP	tv	map_l100_m1_e0	homalt	99.8450	99.7567	99.9335	58.3702	9021	22	9021	6	3	50.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8453	100.0000	99.6910	63.9569	968	0	968	3	3	100.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8453	100.0000	99.6910	64.2357	968	0	968	3	2	66.6667
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8453	100.0000	99.6910	64.2094	968	0	968	3	3	100.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8453	100.0000	99.6910	63.6738	968	0	968	3	2	66.6667
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8455	99.7089	99.9825	55.0685	17127	50	17124	3	2	66.6667
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8455	99.9742	99.7171	60.4476	3877	1	3877	11	0	0.0000
ltrigg-rtg2	SNP	ti	map_siren	homalt	99.8455	99.7415	99.9498	49.3967	37818	98	37812	19	18	94.7368
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.8457	99.8792	99.8121	39.2368	7443	9	7438	14	3	21.4286
hfeng-pmm2	INDEL	D1_5	*	homalt	99.8457	99.8467	99.8447	59.0004	48851	75	48855	76	74	97.3684
hfeng-pmm1	SNP	tv	HG002complexvar	*	99.8458	99.7087	99.9833	21.6860	245435	717	245349	41	20	48.7805
raldana-dualsentieon	SNP	tv	HG002complexvar	*	99.8458	99.7136	99.9784	21.7224	245447	705	245362	53	18	33.9623
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8463	99.7898	99.9029	55.0600	6171	13	6171	6	1	16.6667
cchapple-custom	SNP	*	segdup	homalt	99.8463	99.8790	99.8136	87.7694	10730	13	10710	20	20	100.0000
ndellapenna-hhga	SNP	tv	HG002complexvar	homalt	99.8464	99.8065	99.8864	22.8760	94927	184	94935	108	97	89.8148
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.8465	99.9232	99.7699	29.4425	3903	3	3902	9	1	11.1111
jli-custom	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.8465	99.8976	99.7954	28.9038	3902	4	3903	8	1	12.5000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.8468	99.7812	99.9125	46.5872	2280	5	2283	2	0	0.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.8468	99.7812	99.9125	47.3260	2280	5	2283	2	0	0.0000
rpoplin-dv42	SNP	ti	segdup	homalt	99.8469	99.9067	99.7871	88.5156	7498	7	7498	16	16	100.0000
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8470	99.8221	99.8718	54.9751	6173	11	6232	8	2	25.0000
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8472	99.6949	100.0000	33.7893	1307	4	1307	0	0
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8472	99.7712	99.9233	30.6546	1308	3	1302	1	1	100.0000
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8472	99.6949	100.0000	35.4886	1307	4	1307	0	0
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8472	99.7712	99.9233	31.1675	1308	3	1302	1	1	100.0000
eyeh-varpipe	SNP	tv	map_l100_m2_e0	homalt	99.8474	99.8264	99.8684	67.1566	9198	16	9105	12	4	33.3333
hfeng-pmm2	INDEL	I1_5	HG002complexvar	homalt	99.8477	99.8885	99.8069	52.0702	13433	15	13437	26	25	96.1538
raldana-dualsentieon	INDEL	I1_5	HG002complexvar	homalt	99.8477	99.8959	99.7995	52.5914	13434	14	13438	27	27	100.0000
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8478	99.8054	99.8902	58.2232	28205	55	28208	31	20	64.5161
ltrigg-rtg1	SNP	tv	map_l150_m1_e0	homalt	99.8478	99.7466	99.9492	70.2200	3936	10	3937	2	2	100.0000
raldana-dualsentieon	SNP	tv	map_l100_m2_e0	homalt	99.8479	99.7612	99.9348	60.9327	9192	22	9192	6	3	50.0000
egarrison-hhga	SNP	*	map_l100_m1_e0	homalt	99.8480	99.7630	99.9332	60.8894	26939	64	26939	18	17	94.4444
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8480	100.0000	99.6965	80.4160	657	0	657	2	0	0.0000
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8480	100.0000	99.6965	80.1924	657	0	657	2	0	0.0000
ltrigg-rtg2	SNP	tv	HG002complexvar	*	99.8482	99.7705	99.9260	21.7021	245590	565	245834	182	72	39.5604
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8483	99.7230	99.9740	62.7618	11520	32	11520	3	3	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8483	99.7230	99.9740	62.7618	11520	32	11520	3	3	100.0000
jli-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8485	99.7730	99.9242	55.1449	17138	39	17136	13	8	61.5385
eyeh-varpipe	SNP	tv	map_l100_m2_e1	homalt	99.8487	99.8280	99.8695	67.1866	9286	16	9182	12	4	33.3333
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8488	99.8809	99.8167	61.3691	10898	13	10894	20	5	25.0000

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