PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1588 1589 1590 1591 1592 1593 1594 1595 1596 ... 1720 1721 » 79551-79600 / 86044 show all
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8260	99.7054	99.9469	65.8244	16925	50	16925	9	8	88.8889
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8260	99.7054	99.9469	65.8244	16925	50	16925	9	8	88.8889
ltrigg-rtg2	SNP	tv	map_l100_m2_e0	homalt	99.8261	99.7070	99.9456	61.2864	9187	27	9186	5	3	60.0000
jli-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8261	99.6816	99.9710	63.0365	3444	11	3444	1	0	0.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8261	99.6816	99.9710	63.3120	3444	11	3444	1	1	100.0000
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8263	99.7319	99.9210	54.5963	25291	68	25293	20	15	75.0000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8263	99.7261	99.9268	57.6141	16384	45	16382	12	5	41.6667
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8263	99.7917	99.8610	69.1268	1437	3	1437	2	1	50.0000
eyeh-varpipe	SNP	tv	map_l125_m2_e1	homalt	99.8263	99.7860	99.8666	72.2636	6061	13	5990	8	4	50.0000
jli-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8267	99.9315	99.7221	75.0916	21884	15	21888	61	59	96.7213
ckim-dragen	SNP	*	*	*	99.8268	99.9524	99.7015	21.8489	3053166	1453	3053731	9143	533	5.8296
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8269	99.8611	99.7927	69.0150	1438	2	1444	3	2	66.6667
raldana-dualsentieon	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	21.4966	577	2	577	0	0
jli-custom	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.4462	577	2	577	0	0
astatham-gatk	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	21.9215	577	2	577	0	0
hfeng-pmm2	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.7577	577	2	577	0	0
hfeng-pmm3	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.4462	577	2	577	0	0
hfeng-pmm1	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.5503	577	2	577	0	0
dgrover-gatk	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.2372	577	2	577	0	0
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8273	99.7901	99.8645	55.6157	14739	31	14740	20	5	25.0000
cchapple-custom	SNP	*	HG002complexvar	homalt	99.8273	99.6680	99.9871	18.5601	287616	958	286343	37	32	86.4865
dgrover-gatk	SNP	*	*	hetalt	99.8275	99.6556	100.0000	41.6667	868	3	868	0	0
dgrover-gatk	SNP	tv	*	hetalt	99.8275	99.6556	100.0000	41.6667	868	3	868	0	0
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8275	99.6556	100.0000	44.5296	4051	14	4051	0	0
eyeh-varpipe	SNP	ti	map_l250_m2_e0	homalt	99.8276	99.7713	99.8839	88.9360	1745	4	1721	2	2	100.0000
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8276	99.7048	99.9507	44.3071	4053	12	4053	2	2	100.0000
jli-custom	SNP	tv	*	hetalt	99.8277	99.7704	99.8851	43.3225	869	2	869	1	1	100.0000
jli-custom	SNP	*	*	hetalt	99.8277	99.7704	99.8851	43.3225	869	2	869	1	1	100.0000
hfeng-pmm3	SNP	*	*	hetalt	99.8277	99.7704	99.8851	46.7890	869	2	869	1	1	100.0000
hfeng-pmm3	SNP	tv	*	hetalt	99.8277	99.7704	99.8851	46.7890	869	2	869	1	1	100.0000
ltrigg-rtg2	SNP	tv	map_l100_m2_e1	homalt	99.8278	99.7097	99.9461	61.3020	9275	27	9274	5	3	60.0000
hfeng-pmm2	SNP	ti	*	hetalt	99.8279	99.6564	100.0000	47.9821	580	2	580	0	0
dgrover-gatk	SNP	ti	*	hetalt	99.8279	99.6564	100.0000	41.2361	580	2	580	0	0
astatham-gatk	SNP	ti	*	hetalt	99.8279	99.6564	100.0000	39.9586	580	2	580	0	0
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.8282	99.7547	99.9018	44.2986	4067	10	4070	4	1	25.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.8282	99.7547	99.9018	44.3519	4067	10	4070	4	1	25.0000
astatham-gatk	SNP	tv	func_cds	*	99.8283	99.7483	99.9083	29.1951	4360	11	4359	4	0	0.0000
hfeng-pmm2	SNP	ti	map_l125_m2_e0	homalt	99.8283	99.8239	99.8327	68.6045	11338	20	11338	19	9	47.3684
ltrigg-rtg2	SNP	tv	*	*	99.8284	99.8825	99.7743	19.4672	968557	1139	968810	2192	110	5.0183
ltrigg-rtg2	SNP	tv	map_l100_m1_e0	homalt	99.8284	99.7125	99.9446	58.6136	9017	26	9016	5	3	60.0000
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8284	99.7474	99.9096	58.5102	11056	28	11052	10	4	40.0000
egarrison-hhga	SNP	tv	map_l100_m1_e0	homalt	99.8284	99.7235	99.9335	62.1365	9018	25	9018	6	5	83.3333
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.8285	99.6575	100.0000	18.5754	582	2	583	0	0
hfeng-pmm3	SNP	tv	map_l100_m1_e0	homalt	99.8285	99.8010	99.8562	62.3809	9025	18	9025	13	5	38.4615
ltrigg-rtg1	SNP	tv	*	*	99.8285	99.8863	99.7709	19.9654	968593	1103	968859	2225	103	4.6292
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.8285	99.6575	100.0000	18.3473	582	2	583	0	0
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.8285	99.6575	100.0000	18.1180	582	2	583	0	0
bgallagher-sentieon	SNP	tv	func_cds	*	99.8287	100.0000	99.6579	29.0453	4371	0	4370	15	0	0.0000
ndellapenna-hhga	SNP	tv	map_siren	homalt	99.8287	99.7274	99.9303	55.1755	17193	47	17193	12	10	83.3333
hfeng-pmm3	SNP	*	HG002complexvar	het	99.8290	99.6758	99.9825	18.2080	463988	1509	463859	81	16	19.7531

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge