PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1587 1588 1589 1590 1591 1592 1593 1594 1595 ... 1720 1721 » 79501-79550 / 86044 show all
hfeng-pmm3	SNP	ti	map_l125_m2_e1	homalt	99.8210	99.7993	99.8428	68.5547	11435	23	11435	18	8	44.4444
hfeng-pmm1	SNP	ti	map_l125_m2_e1	homalt	99.8210	99.7905	99.8515	68.6411	11434	24	11434	17	7	41.1765
qzeng-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8211	99.9112	99.7312	57.1511	2250	2	2226	6	3	50.0000
raldana-dualsentieon	SNP	ti	map_l100_m2_e1	homalt	99.8214	99.7134	99.9296	58.8080	18441	53	18441	13	12	92.3077
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.8217	99.8558	99.7875	65.2986	1385	2	1409	3	2	66.6667
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8220	99.6445	100.0000	64.1135	1682	6	1682	0	0
ltrigg-rtg1	SNP	*	map_l100_m1_e0	homalt	99.8221	99.7445	99.8999	60.0030	26934	69	26933	27	24	88.8889
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8221	99.6448	100.0000	51.7603	2244	8	2302	0	0
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8222	99.6798	99.9650	55.3292	17122	55	17119	6	2	33.3333
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8222	99.7630	99.8814	64.1429	1684	4	1684	2	2	100.0000
gduggal-bwafb	SNP	ti	HG002complexvar	*	99.8223	99.7766	99.8681	18.4222	507301	1136	507384	670	291	43.4328
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8224	99.6454	100.0000	42.4180	1124	4	1124	0	0
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8225	99.7340	99.9112	52.5895	1125	3	1125	1	0	0.0000
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8225	99.7340	99.9112	51.8392	1125	3	1125	1	0	0.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8228	99.8636	99.7820	48.9282	3661	5	3661	8	8	100.0000
raldana-dualsentieon	SNP	tv	HG002compoundhet	homalt	99.8228	99.7344	99.9113	42.6999	3379	9	3380	3	2	66.6667
hfeng-pmm1	SNP	tv	HG002compoundhet	homalt	99.8229	99.7934	99.8523	42.7460	3381	7	3381	5	5	100.0000
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.8231	99.8474	99.7988	56.7435	3925	6	3969	8	2	25.0000
ltrigg-rtg1	SNP	ti	HG002complexvar	het	99.8233	99.6823	99.9646	17.0356	313766	1000	313778	111	23	20.7207
astatham-gatk	SNP	ti	func_cds	het	99.8234	99.7178	99.9293	24.2094	8480	24	8478	6	0	0.0000
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8234	99.7647	99.8822	49.2225	848	2	848	1	1	100.0000
hfeng-pmm2	SNP	ti	map_l125_m1_e0	homalt	99.8234	99.8189	99.8280	66.1185	11025	20	11025	19	9	47.3684
jmaeng-gatk	SNP	tv	func_cds	homalt	99.8236	99.6479	100.0000	26.0775	1698	6	1698	0	0
ckim-gatk	SNP	tv	func_cds	homalt	99.8236	99.6479	100.0000	25.7867	1698	6	1698	0	0
egarrison-hhga	SNP	ti	map_l125_m2_e0	homalt	99.8237	99.7183	99.9294	68.6664	11326	32	11326	8	8	100.0000
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.8239	99.8428	99.8051	49.9512	2540	4	2560	5	0	0.0000
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8239	99.7293	99.9186	58.6595	11054	30	11050	9	2	22.2222
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8244	99.7128	99.9361	40.9541	6250	18	6259	4	3	75.0000
ndellapenna-hhga	SNP	ti	map_siren	homalt	99.8244	99.7072	99.9418	51.3860	37805	111	37806	22	20	90.9091
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8246	99.7050	99.9445	72.0298	5407	16	5407	3	2	66.6667
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8246	99.7050	99.9445	72.0298	5407	16	5407	3	2	66.6667
eyeh-varpipe	SNP	tv	map_l125_m2_e0	homalt	99.8247	99.7839	99.8655	72.1762	6004	13	5941	8	4	50.0000
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.8248	99.7374	99.9124	46.8961	2279	6	2282	2	0	0.0000
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8249	99.6503	100.0000	45.9813	855	3	867	0	0
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8249	99.6503	100.0000	48.5869	855	3	855	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.8250	99.7812	99.8688	48.1162	2280	5	2283	3	0	0.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.8250	99.7812	99.8688	48.0455	2280	5	2283	3	0	0.0000
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8251	99.7031	99.9475	55.2981	17126	51	17123	9	6	66.6667
egarrison-hhga	SNP	*	HG002complexvar	*	99.8252	99.7002	99.9506	18.9844	752119	2262	752170	372	223	59.9462
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.8252	99.7776	99.8728	71.9221	3141	7	3141	4	3	75.0000
egarrison-hhga	SNP	ti	map_l125_m2_e1	homalt	99.8253	99.7207	99.9300	68.7014	11426	32	11426	8	8	100.0000
dgrover-gatk	SNP	*	HG002compoundhet	hetalt	99.8257	99.6520	100.0000	22.7518	859	3	859	0	0
dgrover-gatk	SNP	tv	HG002compoundhet	hetalt	99.8257	99.6520	100.0000	22.7518	859	3	859	0	0
ltrigg-rtg1	SNP	*	HG002compoundhet	hetalt	99.8257	99.6520	100.0000	21.3175	859	3	860	0	0
ltrigg-rtg1	SNP	tv	HG002compoundhet	hetalt	99.8257	99.6520	100.0000	21.3175	859	3	860	0	0
raldana-dualsentieon	SNP	*	map_l100_m1_e0	homalt	99.8258	99.7223	99.9295	56.9722	26928	75	26928	19	15	78.9474
ndellapenna-hhga	SNP	*	map_siren	homalt	99.8258	99.7135	99.9382	52.6378	54998	158	54999	34	30	88.2353
gduggal-bwafb	SNP	*	HG002compoundhet	hetalt	99.8259	99.7680	99.8839	24.0741	860	2	860	1	1	100.0000
gduggal-bwafb	SNP	tv	HG002compoundhet	hetalt	99.8259	99.7680	99.8839	24.0741	860	2	860	1	1	100.0000
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8260	99.6527	100.0000	62.8065	3443	12	3443	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge