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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1586 1587 1588 1589 1590 1591 1592 1593 1594 ... 1720 1721 » 79451-79500 / 86044 show all
jli-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8148	99.6933	99.9367	55.5774	11050	34	11048	7	4	57.1429
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8152	99.6720	99.9589	50.5792	2431	8	2431	1	0	0.0000
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8153	99.7048	99.9260	44.7261	4053	12	4053	3	2	66.6667
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8156	100.0000	99.6318	74.2657	1353	0	1353	5	3	60.0000
ltrigg-rtg2	SNP	*	*	het	99.8157	99.8572	99.7742	16.9842	1870922	2676	1871158	4235	135	3.1877
bgallagher-sentieon	SNP	ti	HG002compoundhet	het	99.8158	99.7685	99.8631	39.5979	9483	22	9481	13	6	46.1538
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.8159	99.9133	99.7187	39.4602	4612	4	4608	13	3	23.0769
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.8160	99.7792	99.8528	43.7655	4068	9	4071	6	1	16.6667
jlack-gatk	INDEL	D1_5	HG002complexvar	homalt	99.8161	99.8396	99.7926	59.1577	10581	17	10588	22	21	95.4545
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8161	99.8620	99.7702	64.9597	2171	3	2171	5	0	0.0000
raldana-dualsentieon	SNP	ti	map_l100_m1_e0	homalt	99.8161	99.7049	99.9275	56.2318	17907	53	17907	13	12	92.3077
raldana-dualsentieon	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8164	99.6701	99.9632	59.9499	10875	36	10872	4	3	75.0000
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8164	99.7288	99.9041	43.6419	6251	17	6252	6	5	83.3333
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8164	99.6914	99.9417	52.6220	17124	53	17138	10	7	70.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8164	99.6885	99.9447	54.6733	25280	79	25281	14	10	71.4286
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8164	99.7447	99.8882	43.9520	6252	16	6253	7	5	71.4286
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8165	99.6337	100.0000	76.1717	544	2	544	0	0
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8165	99.6337	100.0000	77.0173	544	2	544	0	0
eyeh-varpipe	SNP	ti	map_l100_m2_e0	hetalt	99.8165	100.0000	99.6337	65.9176	30	0	272	1	1	100.0000
astatham-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8165	99.6633	99.9702	61.6256	10063	34	10063	3	3	100.0000
eyeh-varpipe	SNP	ti	map_l150_m0_e0	homalt	99.8168	99.8189	99.8146	77.6220	2756	5	2692	5	3	60.0000
ckim-dragen	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8169	99.8526	99.7812	60.4097	55549	82	55631	122	39	31.9672
qzeng-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8173	100.0000	99.6353	62.2834	1383	0	1366	5	2	40.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8174	99.8052	99.8295	60.0496	16397	32	16396	28	4	14.2857
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8175	99.6357	100.0000	79.6654	547	2	547	0	0
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8177	99.8179	99.8175	80.5121	548	1	547	1	0	0.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8179	99.8179	99.8179	81.1664	548	1	548	1	0	0.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8179	99.8179	99.8179	81.2244	548	1	548	1	0	0.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8179	99.8179	99.8179	81.1664	548	1	548	1	0	0.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8179	99.8179	99.8179	80.8444	548	1	548	1	0	0.0000
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8179	99.8179	99.8179	80.9639	548	1	548	1	0	0.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8179	99.8179	99.8179	80.4069	548	1	548	1	0	0.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8179	99.8179	99.8179	80.3578	548	1	548	1	0	0.0000
ltrigg-rtg1	SNP	*	map_l100_m2_e0	homalt	99.8182	99.7420	99.8945	62.4790	27452	71	27451	29	26	89.6552
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8183	99.8183	99.8183	42.3560	2197	4	2198	4	3	75.0000
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.8184	99.8386	99.7982	36.6402	2474	4	2473	5	1	20.0000
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8184	99.8912	99.7456	35.4899	2755	3	2745	7	1	14.2857
ltrigg-rtg1	SNP	*	*	het	99.8185	99.8570	99.7799	17.5567	1870919	2679	1871167	4127	102	2.4715
egarrison-hhga	SNP	ti	map_l125_m1_e0	homalt	99.8187	99.7103	99.9274	66.0474	11013	32	11013	8	8	100.0000
eyeh-varpipe	SNP	ti	map_l100_m2_e1	hetalt	99.8192	100.0000	99.6390	65.8025	31	0	276	1	1	100.0000
hfeng-pmm1	SNP	ti	map_l125_m2_e0	homalt	99.8195	99.7887	99.8502	68.6124	11334	24	11334	17	7	41.1765
hfeng-pmm3	SNP	ti	map_l125_m2_e0	homalt	99.8195	99.7975	99.8415	68.5286	11335	23	11335	18	8	44.4444
raldana-dualsentieon	SNP	ti	map_l100_m2_e0	homalt	99.8196	99.7105	99.9288	58.8267	18256	53	18256	13	12	92.3077
hfeng-pmm3	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8197	99.8356	99.8037	72.1124	21863	36	21863	43	42	97.6744
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8198	99.9742	99.6658	59.2542	3877	1	3877	13	0	0.0000
eyeh-varpipe	SNP	tv	map_l125_m1_e0	homalt	99.8200	99.7782	99.8619	70.0620	5847	13	5785	8	4	50.0000
ltrigg-rtg1	SNP	*	map_l100_m2_e1	homalt	99.8200	99.7446	99.8955	62.4711	27725	71	27724	29	26	89.6552
dgrover-gatk	INDEL	D1_5	*	homalt	99.8204	99.9489	99.6922	62.5668	48901	25	48906	151	149	98.6755
dgrover-gatk	SNP	ti	map_siren	homalt	99.8204	99.6914	99.9498	49.0891	37799	117	37793	19	17	89.4737
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.8206	99.6928	99.9487	29.2204	3894	12	3893	2	1	50.0000

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