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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1585 1586 1587 1588 1589 1590 1591 1592 1593 ... 1720 1721 » 79401-79450 / 86044 show all
hfeng-pmm2	SNP	*	HG002complexvar	het	99.8103	99.6430	99.9782	18.0375	463835	1662	463706	101	15	14.8515
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8103	99.7360	99.8847	56.3092	14731	39	14733	17	4	23.5294
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8105	99.6688	99.9525	54.4112	25275	84	25277	12	7	58.3333
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8105	100.0000	99.6217	53.8819	1580	0	1580	6	0	0.0000
eyeh-varpipe	SNP	*	HG002complexvar	het	99.8105	99.8904	99.7307	18.2348	464990	510	429610	1160	174	15.0000
ltrigg-rtg2	SNP	*	map_l100_m2_e0	homalt	99.8108	99.6875	99.9344	60.3899	27437	86	27435	18	16	88.8889
gduggal-bwafb	SNP	*	HG002complexvar	*	99.8109	99.7664	99.8554	20.0831	752623	1762	752783	1090	464	42.5688
jmaeng-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8116	99.6584	99.9652	56.5451	20130	69	20130	7	7	100.0000
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8116	99.6527	99.9710	62.5408	3443	12	3443	1	1	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8117	99.6241	100.0000	33.6853	1325	5	1319	0	0
hfeng-pmm1	SNP	*	map_l125_m2_e1	homalt	99.8117	99.7947	99.8288	69.0610	17496	36	17496	30	12	40.0000
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8118	99.6334	99.9908	59.9447	10871	40	10868	1	0	0.0000
egarrison-hhga	SNP	ti	HG002complexvar	het	99.8118	99.6651	99.9589	16.9554	313712	1054	313715	129	51	39.5349
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8119	99.8119	99.8119	81.3574	1061	2	1061	2	1	50.0000
cchapple-custom	SNP	tv	HG002complexvar	homalt	99.8120	99.6331	99.9915	20.8601	94762	349	94159	8	7	87.5000
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8120	99.9059	99.7183	81.3713	1062	1	1062	3	1	33.3333
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8120	99.9059	99.7183	81.2335	1062	1	1062	3	1	33.3333
dgrover-gatk	SNP	*	map_siren	homalt	99.8121	99.6791	99.9455	50.4067	54979	177	54970	30	26	86.6667
eyeh-varpipe	SNP	*	map_l100_m0_e0	homalt	99.8121	99.7935	99.8307	65.9910	11596	24	11205	19	8	42.1053
eyeh-varpipe	SNP	ti	map_l250_m1_e0	homalt	99.8123	99.7511	99.8737	88.1405	1603	4	1581	2	2	100.0000
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.8125	99.9061	99.7191	40.4113	7445	7	7455	21	2	9.5238
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8126	99.7437	99.8815	55.8039	25294	65	25297	30	17	56.6667
egarrison-hhga	SNP	*	map_l125_m2_e0	homalt	99.8127	99.7007	99.9250	68.9614	17323	52	17323	13	13	100.0000
ltrigg-rtg2	SNP	*	map_l100_m1_e0	homalt	99.8127	99.6852	99.9406	57.7080	26918	85	26916	16	14	87.5000
ltrigg-rtg2	SNP	*	map_l100_m2_e1	homalt	99.8127	99.6906	99.9351	60.3846	27710	86	27708	18	16	88.8889
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.8130	100.0000	99.6267	42.4234	2138	0	2135	8	2	25.0000
hfeng-pmm2	SNP	*	map_l125_m2_e0	homalt	99.8130	99.8158	99.8101	69.0538	17343	32	17343	33	14	42.4242
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8131	100.0000	99.6269	65.1948	267	0	267	1	1	100.0000
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8131	99.6954	99.9311	54.3062	10147	31	10148	7	7	100.0000
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8134	99.7514	99.8755	42.5661	1605	4	1605	2	2	100.0000
gduggal-bwafb	SNP	ti	segdup	homalt	99.8134	99.7602	99.8666	88.7165	7487	18	7487	10	10	100.0000
raldana-dualsentieon	SNP	*	HG002complexvar	het	99.8134	99.6490	99.9784	18.1564	463863	1634	463733	100	18	18.0000
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8135	99.6690	99.9585	72.5387	2409	8	2409	1	1	100.0000
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8135	99.6690	99.9585	74.2163	2409	8	2409	1	1	100.0000
ckim-dragen	SNP	tv	*	*	99.8136	99.9495	99.6782	25.0811	969200	490	969499	3130	164	5.2396
hfeng-pmm1	SNP	*	HG002complexvar	het	99.8138	99.6436	99.9845	18.0286	463838	1659	463708	72	19	26.3889
rpoplin-dv42	SNP	*	segdup	homalt	99.8140	99.8883	99.7398	89.1939	10731	12	10731	28	28	100.0000
hfeng-pmm1	SNP	ti	map_l125_m1_e0	homalt	99.8143	99.7827	99.8460	66.1307	11021	24	11021	17	7	41.1765
astatham-gatk	INDEL	D1_5	*	homalt	99.8143	99.9448	99.6841	62.4034	48899	27	48904	155	152	98.0645
hfeng-pmm3	SNP	ti	map_l125_m1_e0	homalt	99.8144	99.7918	99.8370	66.0308	11022	23	11022	18	8	44.4444
cchapple-custom	SNP	tv	segdup	homalt	99.8144	99.9074	99.7215	89.1707	3235	3	3223	9	9	100.0000
egarrison-hhga	SNP	*	map_l125_m2_e1	homalt	99.8144	99.7034	99.9257	69.0000	17480	52	17480	13	13	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8145	99.6296	100.0000	64.7757	269	1	267	0	0
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8145	99.6296	100.0000	63.3242	269	1	267	0	0
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8145	99.8409	99.7880	71.0316	1883	3	1883	4	2	50.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8145	99.6296	100.0000	63.2231	269	1	267	0	0
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8145	99.6296	100.0000	64.6358	269	1	267	0	0
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8145	99.6296	100.0000	55.7214	269	1	267	0	0
hfeng-pmm2	SNP	*	map_l125_m2_e1	homalt	99.8146	99.8175	99.8118	69.0869	17500	32	17500	33	14	42.4242
ltrigg-rtg1	SNP	*	HG002complexvar	het	99.8148	99.6788	99.9511	18.4181	464005	1495	464235	227	59	25.9912

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