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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1584 1585 1586 1587 1588 1589 1590 1591 1592 ... 1720 1721 » 79351-79400 / 86044 show all
hfeng-pmm1	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8037	99.8082	99.7991	72.6490	21857	42	21857	44	44	100.0000
hfeng-pmm1	SNP	*	map_l125_m1_e0	homalt	99.8048	99.7870	99.8225	66.5790	16869	36	16869	30	12	40.0000
dgrover-gatk	INDEL	D1_5	HG002complexvar	het	99.8048	99.6966	99.9132	56.2931	20702	63	20710	18	11	61.1111
ltrigg-rtg2	SNP	ti	map_l100_m1_e0	homalt	99.8049	99.6715	99.9386	57.1476	17901	59	17900	11	11	100.0000
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8049	99.6537	99.9566	69.9831	11512	40	11514	5	2	40.0000
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8049	99.6537	99.9566	69.9831	11512	40	11514	5	2	40.0000
ltrigg-rtg1	SNP	ti	map_l100_m1_e0	homalt	99.8050	99.7216	99.8885	59.4316	17910	50	17910	20	20	100.0000
hfeng-pmm2	SNP	ti	map_l150_m2_e1	homalt	99.8050	99.8180	99.7921	73.2339	7679	14	7679	16	7	43.7500
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8050	99.7787	99.8314	54.7146	11271	25	11248	19	17	89.4737
ckim-gatk	INDEL	D1_5	*	homalt	99.8051	99.9366	99.6739	62.4819	48895	31	48902	160	157	98.1250
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.8051	99.9133	99.6971	35.6178	4612	4	4608	14	2	14.2857
ltrigg-rtg2	SNP	ti	map_l100_m2_e1	homalt	99.8051	99.6810	99.9295	59.8306	18435	59	18434	13	13	100.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8060	99.8383	99.7738	56.4379	6174	10	6174	14	1	7.1429
rpoplin-dv42	SNP	ti	map_siren	homalt	99.8060	99.7283	99.8838	52.4445	37813	103	37814	44	42	95.4545
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8061	99.6496	99.9630	75.1151	5404	19	5404	2	1	50.0000
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.8061	99.8706	99.7416	78.4940	772	1	772	2	0	0.0000
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8061	99.6496	99.9630	75.1151	5404	19	5404	2	1	50.0000
ltrigg-rtg2	SNP	tv	HG002complexvar	het	99.8062	99.7174	99.8951	21.1944	150308	426	150523	158	48	30.3797
bgallagher-sentieon	SNP	*	HG002compoundhet	*	99.8063	99.8025	99.8102	41.0420	25771	51	25764	49	25	51.0204
dgrover-gatk	SNP	*	HG002compoundhet	*	99.8063	99.8102	99.8025	41.2435	25773	49	25766	51	36	70.5882
jli-custom	INDEL	I1_5	*	homalt	99.8065	99.8527	99.7603	53.8126	60339	89	60343	145	140	96.5517
ltrigg-rtg1	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8066	99.6337	99.9801	44.8476	10065	37	10060	2	1	50.0000
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8068	99.8344	99.7793	75.9360	3617	6	3617	8	3	37.5000
ndellapenna-hhga	SNP	ti	HG002complexvar	*	99.8069	99.6755	99.9387	17.4775	506786	1650	506808	311	223	71.7042
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8072	99.6609	99.9540	61.5860	10874	37	10870	5	2	40.0000
egarrison-hhga	SNP	*	map_l125_m1_e0	homalt	99.8075	99.6924	99.9229	66.3441	16853	52	16853	13	13	100.0000
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8076	99.7578	99.8575	57.0019	7002	17	7006	10	6	60.0000
hfeng-pmm2	SNP	*	map_l125_m1_e0	homalt	99.8078	99.8107	99.8048	66.6048	16873	32	16873	33	14	42.4242
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8080	99.6266	99.9901	51.1176	10140	38	10103	1	1	100.0000
jli-custom	SNP	tv	HG002compoundhet	homalt	99.8081	99.7934	99.8228	43.2831	3381	7	3380	6	4	66.6667
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8081	99.6424	99.9744	76.1009	3901	14	3901	1	1	100.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8082	99.6679	99.9488	76.8939	3902	13	3902	2	1	50.0000
gduggal-bwafb	SNP	ti	*	*	99.8083	99.8659	99.7507	20.3177	2082722	2796	2082858	5206	495	9.5083
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8087	99.8883	99.7292	46.8642	6261	7	6261	17	3	17.6471
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8087	99.7595	99.8579	55.0764	25298	61	25300	36	29	80.5556
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8087	99.7134	99.9043	58.1701	28179	81	28181	27	15	55.5556
jlack-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.8088	99.6183	100.0000	63.4198	522	2	522	0	0
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8088	99.7806	99.8371	58.7309	28198	62	28192	46	19	41.3043
eyeh-varpipe	SNP	ti	map_l100_m1_e0	hetalt	99.8088	100.0000	99.6183	63.7119	29	0	261	1	1	100.0000
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.8088	99.6183	100.0000	64.2221	522	2	522	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.3737	523	2	523	0	0
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.6961	523	2	523	0	0
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.6161	523	2	523	0	0
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	63.7883	523	2	520	0	0
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.4953	523	2	523	0	0
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	69.3435	523	2	523	0	0
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.8093	99.7776	99.8411	72.0082	3141	7	3141	5	3	60.0000
cchapple-custom	SNP	ti	HG002complexvar	*	99.8096	99.6932	99.9263	17.3694	506876	1560	505502	373	274	73.4584
bgallagher-sentieon	INDEL	D1_5	HG002complexvar	het	99.8096	99.7111	99.9084	56.0707	20705	60	20713	19	12	63.1579
hfeng-pmm1	SNP	*	map_l125_m2_e0	homalt	99.8100	99.7928	99.8273	69.0265	17339	36	17339	30	12	40.0000

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