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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1582 1583 1584 1585 1586 1587 1588 1589 1590 ... 1720 1721 » 79251-79300 / 86044 show all
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7919	99.6278	99.9566	63.4476	11509	43	11509	5	4	80.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7919	99.6278	99.9566	63.4476	11509	43	11509	5	4	80.0000
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7920	99.9306	99.6537	69.7338	1439	1	1439	5	0	0.0000
hfeng-pmm3	SNP	ti	map_l150_m2_e1	homalt	99.7920	99.7790	99.8050	73.1684	7676	17	7676	15	6	40.0000
egarrison-hhga	SNP	tv	map_l125_m2_e0	homalt	99.7920	99.6676	99.9167	69.5036	5997	20	5997	5	5	100.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7923	99.6445	99.9406	65.1625	1682	6	1682	1	1	100.0000
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7923	99.6650	99.9200	46.9810	6247	21	6247	5	3	60.0000
hfeng-pmm1	SNP	tv	map_l125_m2_e0	homalt	99.7923	99.8006	99.7840	69.7785	6005	12	6005	13	5	38.4615
jli-custom	SNP	*	map_l100_m1_e0	homalt	99.7923	99.6482	99.9369	57.0814	26908	95	26908	17	16	94.1176
ckim-dragen	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.7926	99.8634	99.7220	66.5121	17544	24	17576	49	13	26.5306
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7927	99.7427	99.8427	56.7264	3877	10	3809	6	3	50.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7927	99.5863	100.0000	78.9598	2407	10	2407	0	0
jmaeng-gatk	INDEL	D1_5	*	homalt	99.7928	99.9285	99.6576	62.5365	48891	35	48898	168	166	98.8095
hfeng-pmm3	SNP	*	map_l125_m1_e0	homalt	99.7929	99.7693	99.8165	66.4802	16866	39	16866	31	13	41.9355
ckim-dragen	SNP	*	HG002compoundhet	*	99.7929	99.7831	99.8027	41.5217	25766	56	25804	51	26	50.9804
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7930	99.8068	99.7792	75.7754	3616	7	3616	8	3	37.5000
raldana-dualsentieon	SNP	tv	func_cds	het	99.7933	99.9624	99.6248	29.8500	2656	1	2655	10	0	0.0000
hfeng-pmm2	SNP	tv	HG002compoundhet	homalt	99.7933	99.7639	99.8228	43.5008	3380	8	3380	6	5	83.3333
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7936	99.6701	99.9173	72.0908	16919	56	16921	14	4	28.5714
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7936	99.6701	99.9173	72.0908	16919	56	16921	14	4	28.5714
bgallagher-sentieon	SNP	ti	map_l100_m1_e0	homalt	99.7937	99.6659	99.9218	56.9365	17900	60	17900	14	12	85.7143
dgrover-gatk	SNP	tv	map_siren	homalt	99.7938	99.6520	99.9360	53.0780	17180	60	17177	11	9	81.8182
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7938	100.0000	99.5885	64.0133	968	0	968	4	4	100.0000
egarrison-hhga	SNP	tv	map_l125_m2_e1	homalt	99.7940	99.6707	99.9175	69.5482	6054	20	6054	5	5	100.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7941	99.9742	99.6146	59.9671	3877	1	3877	15	0	0.0000
ckim-dragen	SNP	ti	HG002compoundhet	*	99.7941	99.8055	99.7828	35.8899	17444	34	17457	38	18	47.3684
ltrigg-rtg2	SNP	tv	map_l150_m2_e1	homalt	99.7941	99.6372	99.9515	70.3259	4119	15	4123	2	1	50.0000
ckim-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7942	99.6237	99.9652	56.3615	20123	76	20123	7	7	100.0000
hfeng-pmm1	SNP	tv	map_l125_m2_e1	homalt	99.7942	99.8024	99.7860	69.8227	6062	12	6062	13	5	38.4615
bgallagher-sentieon	SNP	ti	map_l100_m2_e1	homalt	99.7943	99.6648	99.9241	59.4504	18432	62	18432	14	12	85.7143
jli-custom	SNP	*	map_l100_m2_e0	homalt	99.7944	99.6512	99.9381	59.7123	27427	96	27427	17	16	94.1176
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7945	99.7208	99.8684	54.9696	6071	17	6072	8	7	87.5000
cchapple-custom	SNP	ti	HG002complexvar	het	99.7945	99.6988	99.8903	17.3501	313818	948	313318	344	249	72.3837
cchapple-custom	SNP	ti	func_cds	het	99.7946	99.9177	99.6718	27.6397	8497	7	8504	28	1	3.5714
jli-custom	SNP	*	map_l100_m2_e1	homalt	99.7946	99.6510	99.9387	59.6958	27699	97	27699	17	16	94.1176
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7947	99.7947	99.7947	67.0946	486	1	486	1	1	100.0000
bgallagher-sentieon	SNP	ti	map_l100_m2_e0	homalt	99.7949	99.6668	99.9233	59.4718	18248	61	18248	14	12	85.7143
ndellapenna-hhga	SNP	ti	map_l100_m2_e0	homalt	99.7949	99.6723	99.9179	61.7916	18249	60	18249	15	15	100.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7949	99.6672	99.9230	28.5321	3893	13	3892	3	1	33.3333
ghariani-varprowl	SNP	tv	func_cds	homalt	99.7950	100.0000	99.5909	28.7083	1704	0	1704	7	5	71.4286
hfeng-pmm2	SNP	ti	map_l150_m1_e0	homalt	99.7953	99.8089	99.7817	70.9972	7313	14	7313	16	7	43.7500
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7953	99.6820	99.9089	42.1496	2194	7	2194	2	2	100.0000
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7953	99.6820	99.9089	42.1191	2194	7	2194	2	2	100.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7953	99.6169	99.9744	76.0807	3900	15	3900	1	1	100.0000
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7955	99.7728	99.8183	42.2613	2196	5	2197	4	3	75.0000
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7960	99.6973	99.8950	55.4424	17125	52	17126	18	14	77.7778
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7960	99.6623	99.9299	57.3191	17119	58	17115	12	5	41.6667
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7960	99.6105	99.9822	54.2557	11252	44	11220	2	2	100.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7964	99.6289	99.9645	66.6982	16912	63	16912	6	5	83.3333
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7964	99.6289	99.9645	66.6982	16912	63	16912	6	5	83.3333

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