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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1581 1582 1583 1584 1585 1586 1587 1588 1589 ... 1720 1721 » 79201-79250 / 86044 show all
egarrison-hhga	SNP	tv	HG002complexvar	*	99.7884	99.6287	99.9487	21.8626	245238	914	245267	126	78	61.9048
bgallagher-sentieon	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.7886	99.5781	100.0000	24.2812	236	1	237	0	0
bgallagher-sentieon	SNP	*	map_l100_m1_e0	homalt	99.7886	99.6630	99.9146	57.7258	26912	91	26912	23	18	78.2609
hfeng-pmm3	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.7886	99.5781	100.0000	25.0000	236	1	237	0	0
hfeng-pmm1	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.7886	99.5781	100.0000	25.0000	236	1	237	0	0
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.7886	99.5781	100.0000	25.2366	236	1	237	0	0
ckim-dragen	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.7886	99.5781	100.0000	23.8710	236	1	236	0	0
ghariani-varprowl	SNP	*	*	homalt	99.7891	99.9588	99.6200	19.7823	1179670	486	1179792	4500	2208	49.0667
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7891	99.6426	99.9361	57.3259	28159	101	28161	18	11	61.1111
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7892	99.6568	99.9219	57.6377	28163	97	28165	22	14	63.6364
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7892	99.7825	99.7959	36.4791	7339	16	7335	15	5	33.3333
qzeng-custom	SNP	ti	func_cds	*	99.7894	99.8622	99.7168	26.7032	13768	19	13732	39	4	10.2564
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7895	100.0000	99.5798	75.7761	478	0	474	2	2	100.0000
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7896	99.8368	99.7424	34.4616	7343	12	7358	19	8	42.1053
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7896	99.7197	99.8596	27.8116	1423	4	1423	2	2	100.0000
hfeng-pmm3	SNP	ti	map_l150_m2_e0	homalt	99.7899	99.7768	99.8030	73.1277	7599	17	7599	15	6	40.0000
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7899	99.7908	99.7890	71.4801	477	1	473	1	1	100.0000
gduggal-snapfb	SNP	ti	func_cds	*	99.7900	99.9637	99.6169	26.0872	13782	5	13782	53	2	3.7736
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7904	99.6859	99.8951	79.4035	952	3	952	1	1	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7904	99.7906	99.7901	80.0042	953	2	951	2	1	50.0000
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7905	99.6289	99.9527	66.4771	16912	63	16912	8	7	87.5000
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7905	99.6289	99.9527	66.4771	16912	63	16912	8	7	87.5000
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7905	99.6747	99.9066	41.3311	2145	7	2140	2	1	50.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7906	99.7906	99.7906	80.2523	953	2	953	2	1	50.0000
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7906	99.7906	99.7906	80.3781	953	2	953	2	1	50.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7906	99.7906	99.7906	80.5736	953	2	953	2	1	50.0000
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7906	99.6556	99.9260	49.2362	4051	14	4051	3	1	33.3333
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7906	99.6556	99.9260	45.0901	4051	14	4051	3	1	33.3333
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7906	99.7906	99.7906	80.4703	953	2	953	2	1	50.0000
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7907	99.6802	99.9014	44.8913	4052	13	4052	4	1	25.0000
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7907	99.6802	99.9015	41.5683	4052	13	4057	4	3	75.0000
bgallagher-sentieon	SNP	*	map_l100_m2_e0	homalt	99.7908	99.6657	99.9162	60.2352	27431	92	27431	23	18	78.2609
ckim-vqsr	SNP	ti	func_cds	homalt	99.7910	99.5829	100.0000	20.1550	5253	22	5253	0	0
ndellapenna-hhga	SNP	*	HG002complexvar	*	99.7910	99.6474	99.9350	18.9550	751721	2660	751769	489	351	71.7791
bgallagher-sentieon	SNP	*	map_l100_m2_e1	homalt	99.7911	99.6654	99.9170	60.2187	27703	93	27703	23	18	78.2609
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7912	100.0000	99.5833	75.9639	478	0	478	2	2	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7912	100.0000	99.5833	75.9398	478	0	478	2	2	100.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7912	100.0000	99.5833	75.5601	478	0	478	2	2	100.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7912	100.0000	99.5833	75.9519	478	0	478	2	2	100.0000
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7912	100.0000	99.5833	75.7331	478	0	478	2	2	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7912	100.0000	99.5833	75.9880	478	0	478	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7912	100.0000	99.5833	76.0359	478	0	478	2	2	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7912	100.0000	99.5833	75.9880	478	0	478	2	2	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.7914	99.7547	99.8281	43.5620	4067	10	4065	7	3	42.8571
ltrigg-rtg2	SNP	tv	map_l150_m2_e0	homalt	99.7915	99.6326	99.9509	70.3193	4068	15	4069	2	1	50.0000
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7917	99.5842	100.0000	51.7737	479	2	503	0	0
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7917	99.5842	100.0000	52.9026	479	2	503	0	0
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7917	99.5842	100.0000	59.1297	479	2	479	0	0
ltrigg-rtg1	SNP	tv	map_l100_m0_e0	homalt	99.7918	99.7140	99.8697	63.2094	3835	11	3833	5	2	40.0000
raldana-dualsentieon	INDEL	D1_5	*	homalt	99.7919	99.9448	99.6394	61.4897	48899	27	48904	177	175	98.8701

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