PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1579 1580 1581 1582 1583 1584 1585 1586 1587 ... 1720 1721 » 79101-79150 / 86044 show all
bgallagher-sentieon	INDEL	*	func_cds	homalt	99.7792	100.0000	99.5595	38.4824	226	0	226	1	1	100.0000
astatham-gatk	INDEL	*	func_cds	homalt	99.7792	100.0000	99.5595	38.4824	226	0	226	1	1	100.0000
ckim-gatk	INDEL	*	func_cds	homalt	99.7792	100.0000	99.5595	39.4667	226	0	226	1	1	100.0000
ckim-dragen	INDEL	*	func_cds	homalt	99.7792	100.0000	99.5595	37.9781	226	0	226	1	1	100.0000
ckim-vqsr	INDEL	*	func_cds	homalt	99.7792	100.0000	99.5595	39.4667	226	0	226	1	1	100.0000
dgrover-gatk	INDEL	*	func_cds	homalt	99.7792	100.0000	99.5595	38.4824	226	0	226	1	1	100.0000
dgrover-gatk	INDEL	I1_5	HG002complexvar	het	99.7798	99.6646	99.8952	58.2404	18128	61	18108	19	9	47.3684
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7799	99.9599	99.6005	62.1560	2493	1	2493	10	0	0.0000
egarrison-hhga	SNP	*	map_l150_m2_e1	homalt	99.7799	99.6449	99.9152	73.3597	11785	42	11785	10	10	100.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7800	100.0000	99.5609	62.1372	2494	0	2494	11	0	0.0000
ltrigg-rtg2	SNP	ti	segdup	homalt	99.7804	99.9734	99.5881	87.6176	7503	2	7496	31	31	100.0000
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7805	99.6348	99.9267	31.1475	2728	10	2728	2	2	100.0000
qzeng-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7805	99.7685	99.7926	58.3234	3878	9	3850	8	7	87.5000
cchapple-custom	SNP	tv	HG002complexvar	*	99.7805	99.6506	99.9108	21.2813	245292	860	244113	218	153	70.1835
gduggal-bwafb	SNP	ti	HG002complexvar	het	99.7807	99.7408	99.8207	18.4948	313950	816	314019	564	202	35.8156
eyeh-varpipe	SNP	*	map_l125_m0_e0	homalt	99.7810	99.7318	99.8302	73.0404	6694	18	6469	11	5	45.4545
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7811	99.6656	99.8969	59.9463	3874	13	3874	4	4	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7813	99.6999	99.8628	43.7307	3655	11	3639	5	5	100.0000
hfeng-pmm2	SNP	ti	map_l100_m0_e0	homalt	99.7813	99.7685	99.7941	63.0398	7756	18	7756	16	7	43.7500
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7814	99.6361	99.9271	72.2301	1369	5	1370	1	0	0.0000
eyeh-varpipe	SNP	tv	map_l150_m2_e1	homalt	99.7814	99.7339	99.8289	76.4129	4123	11	4083	7	3	42.8571
egarrison-hhga	SNP	*	segdup	homalt	99.7815	99.8976	99.6657	89.1087	10732	11	10732	36	36	100.0000
hfeng-pmm3	SNP	ti	map_l150_m1_e0	homalt	99.7816	99.7680	99.7952	70.9268	7310	17	7310	15	6	40.0000
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7820	99.5649	100.0000	50.4551	1602	7	1633	0	0
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7820	99.5649	100.0000	51.8715	1602	7	1633	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7820	99.5649	100.0000	36.1989	2746	12	2746	0	0
gduggal-bwafb	SNP	*	*	*	99.7820	99.8619	99.7021	21.9848	3050417	4217	3050656	9115	775	8.5025
cchapple-custom	SNP	*	*	het	99.7822	99.8765	99.6880	23.4490	1871274	2313	1871921	5859	675	11.5207
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7823	99.7440	99.8206	33.3561	3896	10	3895	7	3	42.8571
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7823	99.6892	99.8755	54.6328	1604	5	1604	2	1	50.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.7825	99.7971	99.7680	39.6992	3443	7	3440	8	2	25.0000
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7825	99.6169	99.9487	75.9091	3900	15	3900	2	2	100.0000
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7825	99.5948	99.9709	62.1467	3441	14	3441	1	1	100.0000
rpoplin-dv42	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7825	99.5948	99.9709	63.5497	3441	14	3441	1	1	100.0000
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7826	99.6424	99.9232	75.5082	3901	14	3901	3	2	66.6667
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7826	99.6527	99.9129	62.6693	3443	12	3443	3	3	100.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.7826	99.6279	99.9378	69.6768	4819	18	4819	3	3	100.0000
jli-custom	SNP	ti	HG002compoundhet	*	99.7826	99.8112	99.7541	35.5495	17445	33	17445	43	22	51.1628
jli-custom	SNP	tv	map_l100_m2_e0	homalt	99.7826	99.6310	99.9347	60.9754	9180	34	9180	6	5	83.3333
hfeng-pmm3	SNP	tv	HG002complexvar	het	99.7826	99.5854	99.9807	20.9857	150106	625	150027	29	6	20.6897
bgallagher-sentieon	SNP	tv	map_l100_m2_e0	homalt	99.7827	99.6636	99.9021	61.6697	9183	31	9183	9	6	66.6667
jli-custom	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.7828	99.7106	99.8551	69.0939	4823	14	4823	7	4	57.1429
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7830	99.5760	99.9909	55.2895	11037	47	11034	1	0	0.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.7831	99.5671	100.0000	29.1217	460	2	460	0	0
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.7831	99.5671	100.0000	29.5559	460	2	460	0	0
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7831	100.0000	99.5671	71.3400	230	0	230	1	1	100.0000
egarrison-hhga	SNP	ti	map_l150_m2_e0	homalt	99.7831	99.6586	99.9079	73.1839	7590	26	7590	7	7	100.0000
rpoplin-dv42	SNP	*	map_siren	homalt	99.7831	99.6882	99.8783	53.6066	54984	172	54983	67	63	94.0299
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7831	99.5671	100.0000	57.2491	460	2	460	0	0
gduggal-snapfb	SNP	ti	*	homalt	99.7832	99.8062	99.7602	19.1162	801483	1556	801532	1927	269	13.9595

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge