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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1578 1579 1580 1581 1582 1583 1584 1585 1586 ... 1720 1721 » 79051-79100 / 86044 show all
egarrison-hhga	SNP	*	map_l100_m0_e0	homalt	99.7759	99.6299	99.9223	61.7548	11577	43	11577	9	8	88.8889
ckim-gatk	INDEL	D1_5	HG002complexvar	het	99.7759	99.7111	99.8409	56.3066	20705	60	20710	33	15	45.4545
hfeng-pmm2	SNP	*	map_l150_m2_e1	homalt	99.7760	99.7886	99.7633	73.5353	11802	25	11802	28	11	39.2857
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7762	99.6141	99.9389	56.2917	14713	57	14715	9	1	11.1111
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7763	99.6011	99.9520	41.2692	6243	25	6253	3	3	100.0000
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7764	99.6650	99.8881	47.1210	6247	21	6247	7	3	42.8571
dgrover-gatk	INDEL	*	HG002complexvar	homalt	99.7765	99.9223	99.6312	57.3581	27006	21	27016	100	96	96.0000
rpoplin-dv42	SNP	ti	HG002compoundhet	homalt	99.7770	99.8377	99.7163	30.8389	7382	12	7382	21	20	95.2381
eyeh-varpipe	SNP	*	map_l250_m2_e1	homalt	99.7772	99.7057	99.8489	89.2201	2710	8	2643	4	4	100.0000
rpoplin-dv42	SNP	ti	segdup	*	99.7773	99.7799	99.7748	89.3733	19494	43	19492	44	19	43.1818
qzeng-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7774	99.7208	99.8342	53.5684	6071	17	6021	10	8	80.0000
ckim-vqsr	SNP	*	func_cds	homalt	99.7774	99.5558	100.0000	21.6155	6948	31	6948	0	0
egarrison-hhga	SNP	*	map_l150_m2_e0	homalt	99.7775	99.6410	99.9143	73.3265	11657	42	11657	10	10	100.0000
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7775	99.6287	99.9267	58.5881	16368	61	16366	12	1	8.3333
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.7776	99.5561	100.0000	29.2802	2467	11	2466	0	0
jlack-gatk	SNP	ti	*	*	99.7777	99.9393	99.6165	21.7408	2084246	1265	2084182	8024	364	4.5364
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7777	99.7261	99.8294	60.1055	16384	45	16383	28	4	14.2857
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7778	99.5565	100.0000	68.6843	1347	6	1340	0	0
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7778	99.5565	100.0000	70.0067	1347	6	1341	0	0
ltrigg-rtg2	SNP	tv	map_l125_m1_e0	homalt	99.7778	99.6246	99.9315	63.2977	5838	22	5839	4	3	75.0000
ltrigg-rtg1	SNP	*	map_l125_m1_e0	homalt	99.7779	99.6510	99.9051	65.6341	16846	59	16847	16	16	100.0000
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7779	99.5567	100.0000	51.3978	1123	5	1130	0	0
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7779	99.5567	100.0000	49.8447	1123	5	1130	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7779	99.5567	100.0000	51.9264	1123	5	1123	0	0
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7780	99.7214	99.8347	68.2340	9665	27	9665	16	13	81.2500
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.5727	1124	4	1124	1	1	100.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9671	99.5898	57.9481	6070	2	6070	25	24	96.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9506	99.6061	57.9561	6069	3	6069	24	23	95.8333
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9671	99.5898	57.9684	6070	2	6070	25	24	96.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.6020	1124	4	1124	1	1	100.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.4847	1124	4	1124	1	1	100.0000
hfeng-pmm2	SNP	tv	map_l125_m1_e0	homalt	99.7782	99.7952	99.7612	67.4839	5848	12	5848	14	5	35.7143
hfeng-pmm1	INDEL	*	HG002complexvar	homalt	99.7782	99.8372	99.7192	55.9241	26983	44	26991	76	70	92.1053
ltrigg-rtg2	INDEL	*	func_cds	homalt	99.7783	99.5575	100.0000	29.6875	225	1	225	0	0
ltrigg-rtg1	INDEL	*	func_cds	homalt	99.7783	99.5575	100.0000	30.7692	225	1	225	0	0
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7785	99.6681	99.8891	70.9180	5405	18	5405	6	5	83.3333
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7785	99.6681	99.8891	70.9180	5405	18	5405	6	5	83.3333
bgallagher-sentieon	SNP	tv	map_l100_m1_e0	homalt	99.7786	99.6572	99.9002	59.2105	9012	31	9012	9	6	66.6667
eyeh-varpipe	SNP	tv	map_l150_m2_e0	homalt	99.7787	99.7306	99.8269	76.3785	4072	11	4037	7	3	42.8571
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7788	100.0000	99.5585	73.7137	1353	0	1353	6	5	83.3333
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7788	99.5931	99.9652	63.6860	11505	47	11505	4	3	75.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7788	99.5931	99.9652	63.6860	11505	47	11505	4	3	75.0000
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7788	99.8734	99.6843	54.0070	1578	2	1579	5	0	0.0000
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7788	100.0000	99.5585	74.0995	1353	0	1353	6	4	66.6667
jli-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7789	99.6438	99.9143	60.0480	6994	25	6992	6	3	50.0000
dgrover-gatk	SNP	ti	HG002compoundhet	het	99.7790	99.7685	99.7895	39.8442	9483	22	9481	20	14	70.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.7790	99.6566	99.9017	44.3228	4063	14	4066	4	1	25.0000
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7791	99.8466	99.7116	58.4535	11067	17	11063	32	3	9.3750
jli-custom	INDEL	*	func_cds	homalt	99.7792	100.0000	99.5595	36.4146	226	0	226	1	1	100.0000
jlack-gatk	INDEL	*	func_cds	homalt	99.7792	100.0000	99.5595	37.6374	226	0	226	1	1	100.0000

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