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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1577 1578 1579 1580 1581 1582 1583 1584 1585 ... 1720 1721 » 79001-79050 / 86044 show all
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7696	99.5402	100.0000	80.2993	3897	18	3897	0	0
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7697	99.5913	99.9487	76.0057	3899	16	3899	2	2	100.0000
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7697	99.7184	99.8211	26.0771	3895	11	3905	7	1	14.2857
egarrison-hhga	SNP	tv	map_l150_m2_e1	homalt	99.7698	99.6130	99.9272	73.5901	4118	16	4118	3	3	100.0000
bgallagher-sentieon	SNP	*	*	hetalt	99.7699	99.5408	100.0000	40.6164	867	4	867	0	0
bgallagher-sentieon	SNP	tv	*	hetalt	99.7699	99.5408	100.0000	40.6164	867	4	867	0	0
astatham-gatk	SNP	tv	*	hetalt	99.7699	99.5408	100.0000	40.6164	867	4	867	0	0
astatham-gatk	SNP	*	*	hetalt	99.7699	99.5408	100.0000	40.6164	867	4	867	0	0
hfeng-pmm3	SNP	ti	map_siren	*	99.7701	99.6881	99.8523	52.8057	100042	313	100027	148	25	16.8919
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7702	99.8620	99.6786	64.4814	2171	3	2171	7	0	0.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7706	99.5423	100.0000	34.5537	1305	6	1305	0	0
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7706	99.5423	100.0000	34.4550	1305	6	1305	0	0
qzeng-custom	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7709	99.7712	99.7706	38.2436	1308	3	1305	3	2	66.6667
eyeh-varpipe	SNP	tv	map_l150_m1_e0	homalt	99.7710	99.7212	99.8208	74.4574	3935	11	3900	7	3	42.8571
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7712	99.7712	99.7712	36.2974	1308	3	1308	3	3	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7712	99.7476	99.7949	55.7977	25295	64	25298	52	25	48.0769
ckim-gatk	INDEL	I1_5	HG002complexvar	het	99.7716	99.6866	99.8566	58.0913	18132	57	18110	26	13	50.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7720	99.5863	99.9585	72.9893	2407	10	2407	1	1	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7720	99.5863	99.9585	72.8523	2407	10	2407	1	1	100.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7720	99.5863	99.9585	73.0075	2407	10	2407	1	1	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7722	100.0000	99.5455	79.8658	657	0	657	3	1	33.3333
raldana-dualsentieon	SNP	*	map_l125_m2_e0	homalt	99.7723	99.6317	99.9134	65.2834	17311	64	17311	15	11	73.3333
hfeng-pmm1	INDEL	I1_5	*	homalt	99.7725	99.7799	99.7651	52.5960	60295	133	60299	142	137	96.4789
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7726	99.6365	99.9090	41.7859	2193	8	2195	2	1	50.0000
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7729	99.7421	99.8038	67.8356	9667	25	9667	19	15	78.9474
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7731	99.5473	100.0000	61.3407	1759	8	1759	0	0
jli-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7731	99.5473	100.0000	61.6441	1759	8	1759	0	0
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7731	99.5473	100.0000	61.8604	1759	8	1759	0	0
raldana-dualsentieon	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7732	99.6038	99.9432	60.7007	1760	7	1760	1	1	100.0000
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7732	99.6038	99.9432	61.2967	1760	7	1760	1	1	100.0000
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7733	99.9091	99.6378	40.5384	2199	2	2201	8	4	50.0000
hfeng-pmm2	SNP	*	map_l150_m2_e0	homalt	99.7735	99.7863	99.7607	73.5081	11674	25	11674	28	11	39.2857
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7738	99.5485	100.0000	26.8007	441	2	437	0	0
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7738	99.5485	100.0000	27.1667	441	2	437	0	0
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7742	99.6391	99.9096	52.3779	11044	40	11055	10	7	70.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7743	99.7743	99.7743	34.9486	442	1	442	1	1	100.0000
bgallagher-sentieon	INDEL	I1_5	HG002complexvar	het	99.7743	99.6591	99.8897	57.8575	18127	62	18108	20	10	50.0000
raldana-dualsentieon	SNP	*	map_l125_m2_e1	homalt	99.7744	99.6350	99.9142	65.3032	17468	64	17468	15	11	73.3333
egarrison-hhga	SNP	ti	map_l150_m1_e0	homalt	99.7745	99.6451	99.9042	70.8007	7301	26	7301	7	7	100.0000
jli-custom	SNP	tv	func_cds	het	99.7746	99.9624	99.5876	29.8712	2656	1	2656	11	0	0.0000
eyeh-varpipe	SNP	*	map_l250_m2_e0	homalt	99.7746	99.7022	99.8472	89.1514	2678	8	2613	4	4	100.0000
cchapple-custom	SNP	tv	*	*	99.7746	99.8756	99.6738	23.8746	968484	1206	967637	3167	250	7.8939
ckim-dragen	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.7746	99.8617	99.6878	62.5042	35370	49	35441	111	28	25.2252
ltrigg-rtg1	INDEL	D1_5	*	homalt	99.7747	99.5851	99.9650	56.3253	48723	203	48596	17	16	94.1176
astatham-gatk	INDEL	*	HG002complexvar	homalt	99.7747	99.9075	99.6422	57.3610	27002	25	27012	97	94	96.9072
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7748	100.0000	99.5506	34.6549	443	0	443	2	2	100.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7748	100.0000	99.5506	34.7507	443	0	443	2	2	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7748	100.0000	99.5506	34.4624	443	0	443	2	2	100.0000
hfeng-pmm1	SNP	ti	map_l150_m1_e0	homalt	99.7748	99.7543	99.7952	71.0227	7309	18	7309	15	6	40.0000
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7748	100.0000	99.5506	33.1832	443	0	443	2	2	100.0000

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