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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1575 1576 1577 1578 1579 1580 1581 1582 1583 ... 1720 1721 » 78901-78950 / 86044 show all
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7607	99.5225	100.0000	43.1189	1459	7	1459	0	0
ndellapenna-hhga	SNP	tv	map_l100_m2_e0	homalt	99.7609	99.6093	99.9129	63.7805	9178	36	9178	8	6	75.0000
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7610	99.6391	99.8833	55.2713	17115	62	17116	20	15	75.0000
hfeng-pmm3	SNP	tv	map_l125_m2_e1	homalt	99.7612	99.7366	99.7859	69.7479	6058	16	6058	13	5	38.4615
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7612	99.6819	99.8407	71.1771	1880	6	1880	3	2	66.6667
dgrover-gatk	INDEL	D1_5	*	het	99.7614	99.7979	99.7250	59.4296	87397	177	87406	241	125	51.8672
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.7614	99.6188	99.9044	71.9607	3136	12	3136	3	3	100.0000
cchapple-custom	SNP	tv	HG002complexvar	het	99.7615	99.6630	99.8602	21.5432	150223	508	149954	210	146	69.5238
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7615	99.7879	99.7350	71.4307	1882	4	1882	5	4	80.0000
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7617	99.8940	99.6298	72.7364	1884	2	1884	7	5	71.4286
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7617	99.8940	99.6298	72.7247	1884	2	1884	7	5	71.4286
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7617	99.8940	99.6298	72.6774	1884	2	1884	7	5	71.4286
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7617	99.9506	99.5734	57.9016	6069	3	6069	26	25	96.1538
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7617	99.7043	99.8191	54.9748	6070	18	6071	11	9	81.8182
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7617	99.8940	99.6298	72.7247	1884	2	1884	7	5	71.4286
ltrigg-rtg2	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7618	99.5445	99.9801	51.1635	20107	92	20081	4	3	75.0000
hfeng-pmm1	SNP	ti	map_l100_m0_e0	homalt	99.7619	99.7170	99.8069	63.0178	7752	22	7752	15	6	40.0000
ndellapenna-hhga	SNP	tv	map_l100_m1_e0	homalt	99.7619	99.6130	99.9113	61.1747	9008	35	9008	8	6	75.0000
ltrigg-rtg1	INDEL	I1_5	*	homalt	99.7620	99.6227	99.9017	50.6392	60199	228	59978	59	47	79.6610
jli-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7622	99.8232	99.7013	32.7459	7342	13	7343	22	3	13.6364
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.7622	99.7519	99.7725	68.8442	4825	12	4825	11	7	63.6364
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7622	99.6881	99.8364	49.1224	6712	21	6714	11	6	54.5455
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7622	99.5982	99.9267	30.6657	2727	11	2727	2	2	100.0000
jlack-gatk	INDEL	I1_5	HG002complexvar	homalt	99.7623	99.8364	99.6883	53.0964	13426	22	13432	42	40	95.2381
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7625	99.5261	100.0000	43.0894	210	1	210	0	0
gduggal-bwafb	SNP	*	segdup	homalt	99.7625	99.6928	99.8322	89.4414	10710	33	10710	18	18	100.0000
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.7626	99.9133	99.6124	36.8335	4612	4	4626	18	7	38.8889
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7626	99.5802	99.9456	54.3815	14708	62	14709	8	4	50.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7626	99.5735	99.9524	54.0128	14707	63	14708	7	2	28.5714
ndellapenna-hhga	SNP	tv	map_l100_m2_e1	homalt	99.7631	99.6130	99.9137	63.7862	9266	36	9266	8	6	75.0000
hfeng-pmm1	SNP	*	map_l150_m2_e1	homalt	99.7632	99.7548	99.7717	73.5145	11798	29	11798	27	10	37.0370
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.7634	99.7296	99.7971	53.8905	2951	8	2951	6	1	16.6667
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7634	99.8753	99.6517	47.8261	4006	5	4006	14	0	0.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	47.2637	211	0	211	1	0	0.0000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	47.2637	211	0	211	1	0	0.0000
hfeng-pmm1	SNP	tv	HG002complexvar	het	99.7636	99.5469	99.9813	20.8221	150048	683	149969	28	9	32.1429
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	45.3608	211	0	211	1	0	0.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	45.6410	211	0	211	1	0	0.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	47.6543	211	0	211	1	0	0.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	45.7801	211	0	211	1	0	0.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	47.2637	211	0	211	1	0	0.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	47.3945	211	0	211	1	0	0.0000
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	45.6410	211	0	211	1	0	0.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	48.4185	211	0	211	1	0	0.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	47.2637	211	0	211	1	0	0.0000
jlack-gatk	SNP	tv	HG002compoundhet	homalt	99.7638	99.8229	99.7048	42.2900	3382	6	3377	10	9	90.0000
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7641	99.8350	99.6932	57.1024	10893	18	10724	33	14	42.4242
ckim-vqsr	SNP	ti	func_cds	*	99.7642	99.7244	99.8040	29.1716	13749	38	13747	27	0	0.0000
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7642	99.5294	100.0000	48.4461	846	4	846	0	0
raldana-dualsentieon	SNP	tv	HG002complexvar	het	99.7643	99.5575	99.9720	20.9789	150064	667	149985	42	9	21.4286

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