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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1574 1575 1576 1577 1578 1579 1580 1581 1582 ... 1720 1721 » 78851-78900 / 86044 show all
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7545	99.6496	99.8596	26.6735	1422	5	1422	2	2	100.0000
hfeng-pmm3	SNP	*	map_l150_m2_e1	homalt	99.7548	99.7379	99.7716	73.4338	11796	31	11796	27	10	37.0370
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7548	99.6881	99.8216	48.8361	6712	21	6714	12	8	66.6667
ckim-gatk	SNP	ti	HG002complexvar	het	99.7549	99.5549	99.9557	17.5388	313365	1401	313315	139	50	35.9712
jli-custom	SNP	ti	map_l125_m1_e0	homalt	99.7551	99.5835	99.9273	62.3216	10999	46	10999	8	8	100.0000
jli-custom	SNP	ti	map_l125_m2_e1	homalt	99.7552	99.5811	99.9299	65.1529	11410	48	11410	8	8	100.0000
ltrigg-rtg1	SNP	ti	map_l125_m2_e1	homalt	99.7553	99.6160	99.8950	68.0185	11414	44	11415	12	12	100.0000
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.7555	99.7439	99.7671	54.1386	4284	11	4284	10	2	20.0000
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7559	99.5579	99.9547	55.7919	11035	49	11032	5	2	40.0000
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7564	99.5904	99.9230	28.4060	3890	16	3891	3	0	0.0000
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7565	99.6672	99.8461	33.6736	3893	13	3892	6	2	33.3333
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7565	99.6416	99.8717	29.3435	3892	14	3891	5	1	20.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7569	99.5658	99.9487	80.8702	3898	17	3898	2	0	0.0000
ndellapenna-hhga	SNP	tv	HG002complexvar	*	99.7569	99.5881	99.9262	21.8704	245138	1014	245164	181	131	72.3757
ckim-dragen	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.7569	99.8600	99.6542	57.5039	17826	25	17865	62	15	24.1935
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7571	99.6017	99.9130	55.8468	25258	101	25261	22	14	63.6364
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7572	99.5298	99.9857	59.9128	6986	33	6983	1	0	0.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7572	99.5298	99.9857	59.8113	6986	33	6983	1	0	0.0000
ckim-vqsr	SNP	*	func_cds	*	99.7574	99.7080	99.8069	31.6969	18097	53	18094	35	0	0.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7574	99.9306	99.5848	69.2619	1439	1	1439	6	0	0.0000
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.7576	99.6772	99.8383	36.6060	2470	8	2469	4	0	0.0000
ltrigg-rtg2	SNP	*	map_l125_m2_e0	homalt	99.7578	99.5741	99.9422	65.9494	17301	74	17302	10	9	90.0000
ckim-dragen	SNP	ti	HG002complexvar	hetalt	99.7579	99.5169	100.0000	39.2442	206	1	209	0	0
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7580	99.7808	99.7353	72.9432	21851	48	21851	58	58	100.0000
ltrigg-rtg1	SNP	*	map_l150_m2_e1	homalt	99.7587	99.6280	99.8898	72.7027	11783	44	11789	13	13	100.0000
egarrison-hhga	SNP	tv	map_l150_m1_e0	homalt	99.7589	99.5945	99.9237	71.1191	3930	16	3930	3	3	100.0000
hfeng-pmm3	SNP	tv	map_l125_m2_e0	homalt	99.7590	99.7341	99.7838	69.7058	6001	16	6001	13	5	38.4615
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7590	99.5966	99.9219	57.4394	28146	114	28148	22	15	68.1818
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7592	99.5922	99.9267	60.1242	16362	67	16361	12	1	8.3333
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.7593	99.7812	99.7374	46.7118	2280	5	2279	6	2	33.3333
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.7594	99.7374	99.7814	47.4494	2279	6	2282	5	0	0.0000
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.7595	99.7755	99.7435	70.4864	6222	14	6222	16	12	75.0000
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.7595	99.7595	99.7595	70.6652	6221	15	6221	15	12	80.0000
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7596	99.5574	99.9627	68.6053	5399	24	5353	2	2	100.0000
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7596	99.5574	99.9627	68.6053	5399	24	5353	2	2	100.0000
raldana-dualsentieon	SNP	ti	map_l125_m1_e0	homalt	99.7597	99.6016	99.9183	62.2389	11001	44	11001	9	8	88.8889
qzeng-custom	SNP	*	func_cds	*	99.7598	99.8182	99.7016	28.7413	18117	33	18040	54	4	7.4074
eyeh-varpipe	SNP	ti	*	*	99.7598	99.9651	99.5553	19.0734	2084791	727	2061083	9206	307	3.3348
ltrigg-rtg2	SNP	*	map_l125_m2_e1	homalt	99.7600	99.5779	99.9428	65.9933	17458	74	17465	10	9	90.0000
ckim-dragen	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.7602	99.5215	100.0000	47.5348	416	2	415	0	0
astatham-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.7602	99.5215	100.0000	47.2081	416	2	416	0	0
dgrover-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.7602	99.5215	100.0000	47.3418	416	2	416	0	0
ltrigg-rtg1	SNP	*	map_l150_m2_e0	homalt	99.7604	99.6324	99.8886	72.6706	11656	43	11658	13	13	100.0000
ltrigg-rtg1	SNP	ti	segdup	homalt	99.7604	99.9334	99.5880	88.0751	7500	5	7494	31	31	100.0000
hfeng-pmm3	SNP	tv	map_siren	*	99.7604	99.7104	99.8104	56.7354	45797	133	45789	87	15	17.2414
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7605	99.6030	99.9185	55.4188	11040	44	11040	9	6	66.6667
rpoplin-dv42	INDEL	D1_5	*	homalt	99.7606	99.6505	99.8710	59.0122	48755	171	48760	63	56	88.8889
hfeng-pmm1	SNP	*	map_l150_m2_e0	homalt	99.7606	99.7521	99.7692	73.4870	11670	29	11670	27	10	37.0370
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7607	99.5225	100.0000	46.7518	1459	7	1459	0	0
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7607	99.5225	100.0000	43.1975	1459	7	1478	0	0

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