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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1572 1573 1574 1575 1576 1577 1578 1579 1580 ... 1720 1721 » 78751-78800 / 86044 show all
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7419	99.8278	99.6562	49.2016	4058	7	4058	14	0	0.0000
hfeng-pmm3	SNP	ti	*	hetalt	99.7420	99.6564	99.8279	45.8022	580	2	580	1	1	100.0000
raldana-dualsentieon	SNP	ti	*	hetalt	99.7420	99.6564	99.8279	37.7278	580	2	580	1	1	100.0000
jmaeng-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7420	99.5423	99.9426	61.0950	1740	8	1740	1	1	100.0000
jli-custom	SNP	ti	*	hetalt	99.7420	99.6564	99.8279	42.8150	580	2	580	1	1	100.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7421	99.5938	99.8908	50.6550	14710	60	14636	16	7	43.7500
raldana-dualsentieon	SNP	tv	map_l150_m2_e0	homalt	99.7424	99.5836	99.9017	70.2246	4066	17	4066	4	2	50.0000
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7425	99.6656	99.8196	59.9732	3874	13	3874	7	6	85.7143
gduggal-bwafb	SNP	ti	*	hetalt	99.7425	99.8282	99.6569	53.0218	581	1	581	2	2	100.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.7425	99.4863	100.0000	18.9415	581	3	582	0	0
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.7426	99.6705	99.8147	66.5588	4840	16	4849	9	8	88.8889
hfeng-pmm3	SNP	*	map_l150_m1_e0	homalt	99.7427	99.7250	99.7604	71.2100	11242	31	11242	27	10	37.0370
ndellapenna-hhga	SNP	*	map_l125_m2_e1	homalt	99.7429	99.5665	99.9199	68.0072	17456	76	17456	14	13	92.8571
ckim-dragen	INDEL	I1_5	HG002complexvar	homalt	99.7432	99.8141	99.6725	52.7072	13423	25	13390	44	44	100.0000
egarrison-hhga	SNP	ti	map_l125_m0_e0	homalt	99.7435	99.5769	99.9106	67.7962	4472	19	4472	4	4	100.0000
gduggal-snapplat	SNP	ti	func_cds	homalt	99.7435	99.5071	99.9810	20.2128	5249	26	5249	1	1	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7436	99.6160	99.8716	27.5888	3891	15	3890	5	1	20.0000
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7438	99.4888	100.0000	45.1051	2141	11	2142	0	0
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7438	99.5435	99.9450	57.4906	16354	75	16352	9	2	22.2222
cchapple-custom	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7439	99.7184	99.7695	31.0247	3895	11	3895	9	3	33.3333
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7439	99.5818	99.9065	40.0728	2143	9	2138	2	1	50.0000
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7441	99.6928	99.7955	25.9231	3894	12	3904	8	1	12.5000
ltrigg-rtg2	SNP	ti	map_l125_m2_e0	homalt	99.7442	99.5422	99.9470	65.7720	11306	52	11306	6	6	100.0000
hfeng-pmm1	SNP	ti	segdup	*	99.7442	99.8004	99.6881	88.7407	19498	39	19496	61	5	8.1967
eyeh-varpipe	SNP	*	map_l125_m2_e0	hetalt	99.7442	100.0000	99.4898	71.2188	30	0	195	1	0	0.0000
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7447	99.7365	99.7529	55.2418	6056	16	6056	15	15	100.0000
ckim-vqsr	SNP	*	func_cds	het	99.7448	99.8029	99.6867	36.7154	11139	22	11136	35	0	0.0000
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7448	99.5473	99.9432	61.1393	1759	8	1759	1	1	100.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7448	99.5473	99.9432	60.9323	1759	8	1759	1	1	100.0000
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7449	99.5401	99.9505	54.6217	6060	28	6060	3	3	100.0000
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7450	99.6038	99.8865	61.3427	1760	7	1760	2	2	100.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7450	99.6361	99.8542	72.0228	1369	5	1370	2	0	0.0000
qzeng-custom	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7451	99.7462	99.7441	40.9924	2751	7	2728	7	5	71.4286
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7452	99.9341	99.5570	56.8831	6068	4	6068	27	27	100.0000
jli-custom	SNP	*	map_l125_m1_e0	homalt	99.7452	99.5741	99.9169	62.6179	16833	72	16833	14	13	92.8571
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7452	99.6183	99.8724	62.7730	783	3	783	1	0	0.0000
ltrigg-rtg2	SNP	*	map_l100_m0_e0	homalt	99.7457	99.5611	99.9309	58.9350	11569	51	11567	8	6	75.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.7460	99.8094	99.6827	70.4841	3142	6	3142	10	6	60.0000
bgallagher-sentieon	SNP	*	HG002compoundhet	het	99.7460	99.7320	99.7601	45.7386	14140	38	14138	34	11	32.3529
ltrigg-rtg1	SNP	ti	map_l125_m1_e0	homalt	99.7461	99.6016	99.8910	65.4505	11001	44	11001	12	12	100.0000
jli-custom	SNP	*	map_l125_m2_e0	homalt	99.7463	99.5741	99.9191	65.3928	17301	74	17301	14	13	92.8571
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7463	99.4939	100.0000	59.2175	1376	7	1376	0	0
ltrigg-rtg2	SNP	ti	map_l125_m2_e1	homalt	99.7464	99.5462	99.9474	65.8140	11406	52	11407	6	6	100.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7464	99.5570	99.9365	52.5475	1573	7	1573	1	0	0.0000
ltrigg-rtg1	SNP	ti	func_cds	*	99.7465	99.8912	99.6022	21.3270	13772	15	13771	55	1	1.8182
jli-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7466	99.5860	99.9077	57.3042	28143	117	28146	26	19	73.0769
ckim-dragen	SNP	ti	*	het	99.7466	99.9566	99.5375	22.8315	1281335	556	1281494	5955	318	5.3401
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7466	99.8734	99.6200	55.6834	1578	2	1573	6	1	16.6667
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.7468	99.7171	99.7766	54.5091	6697	19	6699	15	8	53.3333
ckim-vqsr	INDEL	*	HG002complexvar	homalt	99.7470	99.8705	99.6237	57.3434	26992	35	27005	102	98	96.0784

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