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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1571 1572 1573 1574 1575 1576 1577 1578 1579 ... 1720 1721 » 78701-78750 / 86044 show all
ltrigg-rtg1	SNP	*	map_l100_m0_e0	homalt	99.7372	99.6299	99.8447	62.2918	11577	43	11575	18	15	83.3333
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.7372	99.6061	99.8685	48.0892	2276	9	2279	3	0	0.0000
hfeng-pmm1	SNP	*	map_l100_m0_e0	homalt	99.7374	99.7074	99.7675	63.8562	11586	34	11586	27	10	37.0370
ltrigg-rtg2	SNP	*	map_l150_m2_e1	homalt	99.7374	99.5434	99.9321	70.4609	11773	54	11779	8	7	87.5000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7375	99.6412	99.8341	75.9622	3610	13	3610	6	3	50.0000
bgallagher-sentieon	SNP	ti	map_l125_m2_e1	homalt	99.7377	99.5724	99.9037	65.6841	11409	49	11409	11	9	81.8182
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7378	99.5812	99.8950	80.4517	951	4	951	1	1	100.0000
rpoplin-dv42	SNP	tv	segdup	homalt	99.7378	99.8456	99.6302	90.4939	3233	5	3233	12	12	100.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7378	99.5812	99.8950	79.8902	951	4	951	1	0	0.0000
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7378	99.5218	99.9547	55.5264	11031	53	11028	5	1	20.0000
egarrison-hhga	SNP	tv	segdup	homalt	99.7379	99.8765	99.5996	90.3915	3234	4	3234	13	13	100.0000
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7380	99.8068	99.6692	75.6445	3616	7	3616	12	6	50.0000
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.7381	99.7754	99.7008	54.7087	1333	3	1333	4	1	25.0000
eyeh-varpipe	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7381	99.9188	99.5581	52.7387	11075	9	10815	48	16	33.3333
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	83.4564	381	2	381	0	0
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	83.7872	381	2	381	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	83.0516	381	2	381	0	0
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	82.6739	381	2	381	0	0
ltrigg-rtg2	SNP	ti	func_cds	*	99.7392	99.8622	99.6165	20.8703	13768	19	13767	53	1	1.8868
eyeh-varpipe	SNP	*	map_l150_m0_e0	homalt	99.7393	99.7065	99.7720	78.7376	4077	12	3939	9	4	44.4444
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	69.1854	574	2	574	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	70.1454	574	2	574	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	70.1454	574	2	574	1	1	100.0000
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	66.3743	574	2	574	1	1	100.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	68.9860	574	2	574	1	1	100.0000
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.7395	99.5954	99.8841	36.0267	1723	7	1724	2	2	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7395	99.7766	99.7024	56.2348	14737	33	14739	44	17	38.6364
jpowers-varprowl	SNP	tv	*	homalt	99.7396	99.9576	99.5225	24.1122	376963	160	377038	1809	1197	66.1692
hfeng-pmm1	SNP	*	segdup	*	99.7400	99.7934	99.6867	89.3409	28009	58	28003	88	11	12.5000
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.7400	99.6173	99.8629	52.8317	3644	14	3643	5	1	20.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.7401	99.6720	99.8083	54.5545	3646	12	3645	7	2	28.5714
ckim-gatk	SNP	*	HG002complexvar	het	99.7401	99.5255	99.9558	19.1024	463288	2209	463160	205	69	33.6585
ltrigg-rtg2	SNP	ti	HG002compoundhet	hetalt	99.7403	99.4819	100.0000	21.4966	576	3	577	0	0
asubramanian-gatk	INDEL	D1_5	HG002complexvar	homalt	99.7403	99.6226	99.8582	60.0860	10558	40	10565	15	13	86.6667
bgallagher-sentieon	SNP	ti	HG002compoundhet	hetalt	99.7403	99.4819	100.0000	21.8453	576	3	576	0	0
ltrigg-rtg2	SNP	tv	*	het	99.7405	99.8410	99.6402	19.4900	590763	941	590991	2134	60	2.8116
ndellapenna-hhga	SNP	*	map_l125_m2_e0	homalt	99.7405	99.5626	99.9191	67.9668	17299	76	17299	14	13	92.8571
ndellapenna-hhga	SNP	ti	segdup	homalt	99.7406	99.8934	99.5882	88.2312	7497	8	7497	31	31	100.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7406	99.4825	100.0000	76.8652	769	4	769	0	0
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7409	99.6119	99.8703	78.8245	770	3	770	1	0	0.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7411	99.4835	100.0000	59.6808	963	5	960	0	0
astatham-gatk	SNP	*	map_siren	homalt	99.7411	99.5377	99.9454	50.1425	54901	255	54892	30	26	86.6667
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.7412	99.7085	99.7738	68.8882	3079	9	3088	7	6	85.7143
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7413	99.9261	99.5572	74.4050	1352	1	1349	6	4	66.6667
ckim-dragen	SNP	tv	map_siren	homalt	99.7415	99.5824	99.9011	51.8437	17168	72	17170	17	15	88.2353
ndellapenna-hhga	SNP	ti	map_l125_m1_e0	homalt	99.7415	99.5473	99.9364	64.8588	10995	50	10995	7	7	100.0000
bgallagher-sentieon	SNP	ti	*	hetalt	99.7416	99.4845	100.0000	40.0000	579	3	579	0	0
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7416	99.8545	99.6289	56.0363	6175	9	6175	23	2	8.6957
ltrigg-rtg1	SNP	tv	*	het	99.7418	99.8465	99.6372	20.0234	590796	908	591027	2152	50	2.3234
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7418	99.9261	99.5582	73.6157	1352	1	1352	6	3	50.0000

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