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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1570 1571 1572 1573 1574 1575 1576 1577 1578 ... 1720 1721 » 78651-78700 / 86044 show all
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7323	99.4660	100.0000	82.1364	1490	8	1490	0	0
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7323	99.4661	100.0000	30.4021	1304	7	1298	0	0
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7323	99.4661	100.0000	34.5710	1304	7	1304	0	0
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7326	99.7326	99.7326	58.2589	373	1	373	1	0	0.0000
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7326	99.5995	99.8661	79.1457	1492	6	1492	2	1	50.0000
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7327	99.4668	100.0000	64.1699	1679	9	1679	0	0
ckim-dragen	SNP	tv	HG002compoundhet	het	99.7327	99.6362	99.8294	55.7255	4656	17	4682	8	3	37.5000
rpoplin-dv42	SNP	tv	map_siren	homalt	99.7328	99.5998	99.8662	55.9755	17171	69	17169	23	21	91.3043
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7328	99.4670	100.0000	48.0069	2426	13	2426	0	0
jli-custom	SNP	*	HG002compoundhet	*	99.7328	99.7599	99.7058	41.1267	25760	62	25757	76	36	47.3684
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7332	99.6004	99.8664	53.4604	2243	9	2243	3	1	33.3333
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7333	100.0000	99.4681	58.4530	374	0	374	2	1	50.0000
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7333	100.0000	99.4681	59.3074	374	0	374	2	1	50.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7333	100.0000	99.4681	59.3514	374	0	374	2	1	50.0000
ndellapenna-hhga	SNP	*	map_l125_m1_e0	homalt	99.7333	99.5504	99.9169	65.2026	16829	76	16829	14	13	92.8571
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7333	100.0000	99.4681	59.4391	374	0	374	2	1	50.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7333	100.0000	99.4681	59.7861	374	0	374	2	1	50.0000
raldana-dualsentieon	SNP	tv	map_l150_m1_e0	homalt	99.7335	99.5692	99.8983	67.6642	3929	17	3929	4	2	50.0000
raldana-dualsentieon	SNP	tv	map_l150_m2_e1	homalt	99.7335	99.5646	99.9029	70.1838	4116	18	4116	4	2	50.0000
jli-custom	SNP	tv	map_l125_m2_e0	homalt	99.7336	99.5679	99.8999	65.8835	5991	26	5991	6	5	83.3333
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7338	99.6454	99.8224	41.5672	1124	4	1124	2	2	100.0000
rpoplin-dv42	SNP	ti	segdup	het	99.7339	99.7007	99.7671	89.8249	11994	36	11992	28	3	10.7143
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7342	99.4993	99.9702	64.1818	16890	85	16793	5	3	60.0000
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7342	99.4993	99.9702	64.1818	16890	85	16793	5	3	60.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7343	99.6285	99.8404	58.9273	28155	105	28158	45	20	44.4444
ltrigg-rtg2	SNP	*	map_l150_m2_e0	homalt	99.7345	99.5384	99.9314	70.4233	11645	54	11647	8	7	87.5000
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7347	99.5374	99.9328	57.9303	16353	76	16352	11	4	36.3636
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7349	99.8133	99.6566	54.0176	10159	19	10157	35	30	85.7143
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7350	99.7281	99.7420	30.1101	7335	20	7346	19	4	21.0526
ltrigg-rtg1	SNP	*	segdup	homalt	99.7351	99.9348	99.5361	88.6997	10736	7	10729	50	50	100.0000
ckim-vqsr	SNP	tv	func_cds	homalt	99.7352	99.4718	100.0000	25.8206	1695	9	1695	0	0
asubramanian-gatk	SNP	tv	func_cds	homalt	99.7352	99.4718	100.0000	25.3304	1695	9	1695	0	0
bgallagher-sentieon	SNP	ti	map_l125_m2_e0	homalt	99.7354	99.5686	99.9028	65.6605	11309	49	11309	11	9	81.8182
ckim-dragen	SNP	*	*	het	99.7355	99.9519	99.5199	24.5349	1872686	901	1873038	9035	444	4.9142
dgrover-gatk	SNP	*	HG002compoundhet	het	99.7355	99.7390	99.7320	46.0622	14141	37	14139	38	24	63.1579
ltrigg-rtg2	SNP	ti	map_l100_m0_e0	homalt	99.7358	99.5369	99.9354	58.2970	7738	36	7738	5	5	100.0000
raldana-dualsentieon	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7358	99.5014	99.9714	60.2855	6984	35	6981	2	1	50.0000
egarrison-hhga	SNP	tv	HG002complexvar	het	99.7360	99.5170	99.9560	21.2359	150003	728	150023	66	28	42.4242
jli-custom	SNP	tv	map_l125_m2_e1	homalt	99.7361	99.5719	99.9009	65.9064	6048	26	6048	6	5	83.3333
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.7361	99.7595	99.7127	70.2512	6221	15	6248	18	14	77.7778
gduggal-bwafb	SNP	ti	*	het	99.7363	99.8649	99.6080	22.2231	1280165	1732	1280284	5038	382	7.5824
gduggal-bwafb	SNP	tv	HG002complexvar	het	99.7366	99.7134	99.7598	23.4830	150302	432	150365	362	122	33.7017
ckim-vqsr	SNP	tv	func_cds	het	99.7366	99.7742	99.6990	44.6481	2651	6	2650	8	0	0.0000
ckim-vqsr	SNP	tv	func_cds	*	99.7367	99.6568	99.8166	38.6616	4356	15	4355	8	0	0.0000
jli-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7367	99.6698	99.8037	67.8161	9660	32	9660	19	12	63.1579
ltrigg-rtg2	SNP	ti	map_l125_m1_e0	homalt	99.7369	99.5292	99.9454	62.9489	10993	52	10993	6	6	100.0000
ckim-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7369	99.5048	99.9701	61.6836	10047	50	10047	3	3	100.0000
ckim-dragen	INDEL	D1_5	HG002complexvar	het	99.7370	99.6292	99.8451	55.8027	20688	77	20632	32	11	34.3750
bgallagher-sentieon	SNP	ti	map_l125_m1_e0	homalt	99.7370	99.5745	99.9001	63.0037	10998	47	10998	11	9	81.8182
ltrigg-rtg2	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7370	99.4951	99.9801	43.3493	10051	51	10045	2	1	50.0000

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