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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1569 1570 1571 1572 1573 1574 1575 1576 1577 ... 1720 1721 » 78601-78650 / 86044 show all
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7255	99.8168	99.6344	78.0409	545	1	545	2	2	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7255	99.8168	99.6344	77.0842	545	1	545	2	1	50.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7257	99.6711	99.7805	65.7905	909	3	909	2	1	50.0000
ndellapenna-hhga	SNP	*	segdup	homalt	99.7258	99.8883	99.5639	88.9154	10731	12	10731	47	47	100.0000
eyeh-varpipe	SNP	*	map_l125_m1_e0	hetalt	99.7260	100.0000	99.4536	69.3980	30	0	182	1	0	0.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7260	99.8005	99.6515	49.5605	4003	8	4003	14	2	14.2857
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7261	99.8504	99.6021	48.7836	4005	6	4005	16	1	6.2500
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7261	99.8636	99.5890	49.1643	1464	2	1454	6	3	50.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7261	99.8504	99.6021	49.5356	4005	6	4005	16	2	12.5000
dgrover-gatk	SNP	ti	map_l100_m2_e0	homalt	99.7264	99.5248	99.9287	59.9046	18222	87	18222	13	11	84.6154
dgrover-gatk	SNP	ti	map_l100_m2_e1	homalt	99.7264	99.5242	99.9294	59.8793	18406	88	18406	13	11	84.6154
egarrison-hhga	SNP	tv	map_l100_m0_e0	homalt	99.7265	99.5580	99.8956	63.0055	3829	17	3829	4	3	75.0000
raldana-dualsentieon	SNP	tv	map_l100_m0_e0	homalt	99.7265	99.5580	99.8956	59.9142	3829	17	3829	4	2	50.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7265	99.6357	99.8175	80.6223	547	2	547	1	0	0.0000
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7265	99.6357	99.8175	79.8233	547	2	547	1	0	0.0000
jli-custom	SNP	tv	map_l125_m1_e0	homalt	99.7265	99.5563	99.8973	63.1639	5834	26	5834	6	5	83.3333
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7268	99.5907	99.8632	46.2500	1460	6	1460	2	1	50.0000
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7268	99.6801	99.7735	67.9777	9661	31	9691	22	18	81.8182
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7270	99.6589	99.7951	46.6278	1461	5	1461	3	3	100.0000
asubramanian-gatk	SNP	*	func_cds	homalt	99.7270	99.4555	100.0000	21.4908	6941	38	6941	0	0
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7272	100.0000	99.4559	70.7045	914	0	914	5	0	0.0000
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.7273	99.7114	99.7433	70.7941	6218	18	6218	16	11	68.7500
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7273	99.6820	99.7726	43.0753	2194	7	2194	5	4	80.0000
bgallagher-sentieon	SNP	*	map_l125_m1_e0	homalt	99.7275	99.5741	99.8813	63.4132	16833	72	16833	20	15	75.0000
ndellapenna-hhga	SNP	tv	map_l125_m2_e1	homalt	99.7279	99.5719	99.8844	68.5879	6048	26	6048	7	6	85.7143
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7283	99.4580	100.0000	77.2087	367	2	356	0	0
dgrover-gatk	INDEL	I1_5	HG002complexvar	*	99.7285	99.6044	99.8530	57.2674	33231	132	33279	49	38	77.5510
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7285	99.4585	100.0000	57.4142	3857	21	3857	0	0
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7285	99.8188	99.6383	55.6923	6061	11	6061	22	22	100.0000
hfeng-pmm3	SNP	*	map_l100_m0_e0	homalt	99.7288	99.6902	99.7675	63.7304	11584	36	11584	27	10	37.0370
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7288	99.5616	99.8965	59.3927	3861	17	3861	4	0	0.0000
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7289	99.5326	99.9260	41.7636	4046	19	4052	3	3	100.0000
bgallagher-sentieon	SNP	*	map_l125_m2_e0	homalt	99.7291	99.5741	99.8845	66.0253	17301	74	17301	20	15	75.0000
gduggal-bwafb	SNP	ti	map_siren	homalt	99.7291	99.5253	99.9338	52.9575	37736	180	37736	25	14	56.0000
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7292	99.5876	99.8713	60.0265	10866	45	10866	14	10	71.4286
jmaeng-gatk	SNP	ti	HG002complexvar	het	99.7293	99.5044	99.9553	17.6005	313206	1560	313156	140	49	35.0000
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7293	99.8915	99.5676	76.0425	921	1	921	4	2	50.0000
dgrover-gatk	SNP	ti	map_l100_m1_e0	homalt	99.7294	99.5323	99.9273	57.4153	17876	84	17876	13	11	84.6154
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7296	100.0000	99.4606	78.2343	922	0	922	5	3	60.0000
qzeng-custom	SNP	ti	func_cds	het	99.7296	99.8589	99.6007	30.7386	8492	12	8481	34	1	2.9412
jli-custom	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.7298	99.6506	99.8091	71.0989	3137	11	3137	6	4	66.6667
hfeng-pmm1	SNP	tv	segdup	*	99.7305	99.7773	99.6837	90.5181	8513	19	8509	27	6	22.2222
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7311	99.4891	99.9743	79.8583	3895	20	3895	1	0	0.0000
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.7312	99.8094	99.6531	71.4710	3142	6	3160	11	8	72.7273
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7314	99.6182	99.8449	68.2587	9655	37	9655	15	13	86.6667
bgallagher-sentieon	SNP	*	map_l125_m2_e1	homalt	99.7315	99.5779	99.8856	66.0476	17458	74	17458	20	15	75.0000
qzeng-custom	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7317	99.7821	99.6812	62.4851	10075	22	10007	32	21	65.6250
ckim-dragen	SNP	ti	HG002compoundhet	het	99.7319	99.7265	99.7373	40.1998	9479	26	9491	25	5	20.0000
ckim-dragen	SNP	*	HG002compoundhet	het	99.7322	99.6967	99.7677	46.4046	14135	43	14173	33	8	24.2424
jli-custom	INDEL	D1_5	HG002complexvar	het	99.7322	99.5618	99.9033	54.7904	20674	91	20667	20	6	30.0000

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