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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1568 1569 1570 1571 1572 1573 1574 1575 1576 ... 1720 1721 » 78551-78600 / 86044 show all
hfeng-pmm2	SNP	tv	map_l150_m2_e1	homalt	99.7219	99.7339	99.7098	74.0785	4123	11	4123	12	4	33.3333
ckim-dragen	SNP	*	map_siren	homalt	99.7220	99.5214	99.9236	48.9049	54892	264	54896	42	38	90.4762
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7221	99.9521	99.4931	42.7028	6265	3	6281	32	9	28.1250
dgrover-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7221	99.9452	99.4999	76.1475	21887	12	21887	110	109	99.0909
dgrover-gatk	INDEL	D1_5	segdup	homalt	99.7222	100.0000	99.4460	94.5665	359	0	359	2	2	100.0000
ckim-vqsr	INDEL	D1_5	segdup	homalt	99.7222	100.0000	99.4460	94.5493	359	0	359	2	2	100.0000
jmaeng-gatk	INDEL	D1_5	segdup	homalt	99.7222	100.0000	99.4460	94.5203	359	0	359	2	2	100.0000
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7222	99.4720	99.9738	61.6817	11491	61	11440	3	1	33.3333
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7222	99.4720	99.9738	61.6817	11491	61	11440	3	1	33.3333
ckim-gatk	INDEL	D1_5	segdup	homalt	99.7222	100.0000	99.4460	94.5493	359	0	359	2	2	100.0000
bgallagher-sentieon	INDEL	D1_5	segdup	homalt	99.7222	100.0000	99.4460	94.4986	359	0	359	2	2	100.0000
astatham-gatk	INDEL	D1_5	segdup	homalt	99.7222	100.0000	99.4460	94.5295	359	0	359	2	2	100.0000
raldana-dualsentieon	INDEL	D1_5	segdup	homalt	99.7222	100.0000	99.4460	94.1708	359	0	359	2	2	100.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7223	99.4893	99.9565	63.3985	11493	59	11493	5	5	100.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7223	99.4893	99.9565	63.3985	11493	59	11493	5	5	100.0000
dgrover-gatk	INDEL	I1_5	*	homalt	99.7224	99.8577	99.5874	55.4630	60342	86	60347	250	246	98.4000
ltrigg-rtg2	INDEL	I1_5	func_cds	*	99.7230	100.0000	99.4475	26.7206	180	0	180	1	0	0.0000
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7230	99.7230	99.7230	60.8884	360	1	360	1	0	0.0000
jli-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.7232	99.8605	99.5863	54.2148	27920	39	27921	116	9	7.7586
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7236	99.5599	99.8877	53.8466	14705	65	15125	17	10	58.8235
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	99.7237	99.8934	99.5546	42.4719	4684	5	4694	21	2	9.5238
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7238	100.0000	99.4490	62.9592	361	0	361	2	1	50.0000
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7238	99.6461	99.8015	61.5050	28160	100	28162	56	44	78.5714
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7238	100.0000	99.4490	63.1098	361	0	361	2	1	50.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7238	100.0000	99.4490	62.9592	361	0	361	2	1	50.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7238	100.0000	99.4490	62.8074	361	0	361	2	1	50.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7238	100.0000	99.4490	62.9969	361	0	361	2	1	50.0000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7238	100.0000	99.4490	62.9592	361	0	361	2	1	50.0000
astatham-gatk	SNP	tv	map_siren	homalt	99.7239	99.5244	99.9243	52.7924	17158	82	17155	13	10	76.9231
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.7240	99.4783	99.9709	35.3959	3432	18	3434	1	1	100.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7241	99.7700	99.6783	64.5024	2169	5	2169	7	0	0.0000
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7242	99.5972	99.8516	52.5270	10137	41	10092	15	11	73.3333
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7244	99.8620	99.5872	63.6182	2171	3	2171	9	0	0.0000
asubramanian-gatk	SNP	ti	func_cds	homalt	99.7244	99.4502	100.0000	20.1522	5246	29	5246	0	0
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7245	99.4505	100.0000	77.8994	543	3	545	0	0
ltrigg-rtg2	SNP	*	map_l150_m1_e0	homalt	99.7245	99.5210	99.9288	67.8086	11219	54	11221	8	7	87.5000
hfeng-pmm3	SNP	tv	segdup	*	99.7247	99.7890	99.6604	90.6553	8514	18	8510	29	5	17.2414
raldana-dualsentieon	INDEL	*	HG002complexvar	homalt	99.7249	99.9038	99.5467	56.9673	27001	26	27010	123	119	96.7480
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	78.0419	544	2	544	1	1	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	77.9531	544	2	544	1	1	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	78.0419	544	2	544	1	1	100.0000
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	77.9263	544	2	544	1	1	100.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	77.9173	544	2	544	1	1	100.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7251	99.4854	99.9660	53.9892	14694	76	14695	5	1	20.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7252	99.5058	99.9456	54.0983	14697	73	14698	8	4	50.0000
ndellapenna-hhga	SNP	tv	map_l125_m2_e0	homalt	99.7253	99.5679	99.8833	68.5442	5991	26	5991	7	6	85.7143
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7253	99.7898	99.6609	56.0602	6171	13	6171	21	2	9.5238
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.7253	99.7681	99.6824	38.1649	3442	8	3453	11	4	36.3636
gduggal-bwafb	SNP	tv	*	*	99.7254	99.8534	99.5978	25.3671	968276	1422	968379	3911	282	7.2104
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7255	99.8168	99.6344	77.4526	545	1	545	2	2	100.0000

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