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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1565 1566 1567 1568 1569 1570 1571 1572 1573 ... 1720 1721 » 78401-78450 / 86044 show all
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7046	99.9754	99.4352	43.5229	4064	1	4049	23	5	21.7391
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7048	99.4757	99.9349	66.5658	16886	89	16886	11	11	100.0000
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7048	99.4757	99.9349	66.5658	16886	89	16886	11	11	100.0000
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7052	99.8278	99.5828	48.0230	4058	7	4058	17	5	29.4118
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7054	99.5294	99.8819	48.3851	846	4	846	1	1	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7054	99.5294	99.8819	48.1640	846	4	846	1	1	100.0000
gduggal-snapplat	SNP	*	func_cds	homalt	99.7054	99.4269	99.9856	21.7587	6939	40	6939	1	1	100.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7054	99.7642	99.6466	52.8246	2538	6	2538	9	1	11.1111
astatham-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7061	99.9315	99.4818	75.9939	21884	15	21884	114	113	99.1228
ltrigg-rtg2	SNP	tv	map_l125_m0_e0	homalt	99.7066	99.4597	99.9548	66.5911	2209	12	2209	1	0	0.0000
raldana-dualsentieon	SNP	*	map_l150_m1_e0	homalt	99.7067	99.5121	99.9020	67.3803	11218	55	11218	11	8	72.7273
ltrigg-rtg2	SNP	ti	map_l150_m2_e1	homalt	99.7069	99.4930	99.9217	70.4375	7654	39	7656	6	6	100.0000
ltrigg-rtg2	SNP	tv	map_l250_m1_e0	homalt	99.7071	99.4159	100.0000	83.9646	851	5	851	0	0
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7071	99.4301	99.9857	60.0126	6979	40	6976	1	0	0.0000
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7071	99.5105	99.9045	32.0412	7319	36	7321	7	2	28.5714
hfeng-pmm1	SNP	*	map_siren	*	99.7072	99.5541	99.8607	53.5315	145576	652	145556	203	64	31.5271
raldana-dualsentieon	SNP	*	map_l150_m2_e1	homalt	99.7077	99.5096	99.9066	69.9014	11769	58	11769	11	8	72.7273
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7077	99.6531	99.7624	58.0995	16372	57	16373	39	28	71.7949
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7078	100.0000	99.4172	52.2803	858	0	853	5	2	40.0000
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7078	99.4172	100.0000	48.8609	853	5	853	0	0
rpoplin-dv42	SNP	*	segdup	het	99.7082	99.6651	99.7514	90.3344	17259	58	17253	43	3	6.9767
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7083	99.4905	99.9270	74.1698	1367	7	1368	1	0	0.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7085	99.5633	99.8541	71.1368	1368	6	1369	2	0	0.0000
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7085	99.7349	99.6820	71.4048	1881	5	1881	6	3	50.0000
hfeng-pmm1	SNP	tv	map_l150_m1_e0	homalt	99.7086	99.7212	99.6960	71.8212	3935	11	3935	12	4	33.3333
hfeng-pmm2	SNP	tv	map_l150_m1_e0	homalt	99.7086	99.7212	99.6960	71.9235	3935	11	3935	12	4	33.3333
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7091	99.9470	99.4723	72.1242	1885	1	1885	10	9	90.0000
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7091	99.9470	99.4723	72.7691	1885	1	1885	10	8	80.0000
ltrigg-rtg1	SNP	*	map_l125_m0_e0	homalt	99.7091	99.5679	99.8506	69.2643	6683	29	6683	10	10	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7093	100.0000	99.4203	57.5646	343	0	343	2	1	50.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7093	100.0000	99.4203	57.3020	343	0	343	2	1	50.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7093	100.0000	99.4203	56.2738	343	0	343	2	1	50.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7093	100.0000	99.4203	57.0361	343	0	343	2	1	50.0000
ckim-gatk	SNP	tv	HG002complexvar	het	99.7094	99.4639	99.9560	22.1876	149923	808	149845	66	19	28.7879
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7095	99.5789	99.8404	58.9584	28141	119	28144	45	19	42.2222
bgallagher-sentieon	SNP	tv	map_l125_m1_e0	homalt	99.7095	99.5734	99.8460	64.1604	5835	25	5835	9	6	66.6667
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7097	99.4621	99.9584	72.8647	2404	13	2404	1	1	100.0000
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7097	99.5308	99.8892	74.1552	3606	17	3606	4	1	25.0000
egarrison-hhga	SNP	ti	map_l150_m0_e0	homalt	99.7098	99.5654	99.8547	73.4497	2749	12	2749	4	4	100.0000
ckim-vqsr	INDEL	I1_5	*	homalt	99.7099	99.8312	99.5890	55.2277	60326	102	60332	249	247	99.1968
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7099	99.7098	99.7099	59.0011	28178	82	28181	82	31	37.8049
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.7099	99.7915	99.6285	54.4538	6702	14	6704	25	8	32.0000
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7100	99.6412	99.7789	75.9521	3610	13	3610	8	3	37.5000
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7100	99.6561	99.7639	53.8981	10143	35	10141	24	24	100.0000
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7101	99.5369	99.8839	62.7379	3439	16	3442	4	4	100.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7101	100.0000	99.4220	81.3578	172	0	172	1	1	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7101	100.0000	99.4220	81.3578	172	0	172	1	1	100.0000
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.7101	99.4220	100.0000	30.6569	1720	10	1710	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7101	99.4220	100.0000	73.1707	344	2	341	0	0
ltrigg-rtg1	SNP	ti	map_l100_m0_e0	homalt	99.7102	99.5884	99.8324	61.6545	7742	32	7742	13	13	100.0000

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