PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1564 1565 1566 1567 1568 1569 1570 1571 1572 ... 1720 1721 » 78351-78400 / 86044 show all
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6967	99.7400	99.6534	39.6128	4604	12	4600	16	2	12.5000
ckim-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6970	99.9315	99.4637	76.0277	21884	15	21884	118	117	99.1525
ndellapenna-hhga	SNP	tv	map_l150_m2_e1	homalt	99.6971	99.5162	99.8786	72.6929	4114	20	4114	5	4	80.0000
raldana-dualsentieon	SNP	ti	map_l150_m2_e0	homalt	99.6974	99.4879	99.9077	69.7016	7577	39	7577	7	6	85.7143
astatham-gatk	INDEL	D1_5	*	het	99.6974	99.6803	99.7145	58.9760	87294	280	87301	250	122	48.8000
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.6975	99.6368	99.7584	27.0564	2469	9	2477	6	0	0.0000
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6976	99.5818	99.8136	41.7639	2143	9	2142	4	4	100.0000
cchapple-custom	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.6976	99.7579	99.6374	34.5809	2472	6	2473	9	3	33.3333
gduggal-snapfb	SNP	*	func_cds	*	99.6978	99.9614	99.4355	28.3431	18143	7	18143	103	2	1.9418
jli-custom	SNP	*	map_l150_m1_e0	homalt	99.6978	99.4855	99.9109	67.4251	11215	58	11215	10	10	100.0000
ltrigg-rtg1	SNP	tv	map_l150_m0_e0	homalt	99.6981	99.4729	99.9244	76.2016	1321	7	1321	1	1	100.0000
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6987	99.3992	100.0000	81.4570	1489	9	1489	0	0
gduggal-snapfb	SNP	*	*	homalt	99.6988	99.7992	99.5986	21.4529	1177792	2370	1177860	4747	451	9.5007
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6989	99.5626	99.8355	53.1956	3642	16	3641	6	1	16.6667
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6989	99.4660	99.9329	79.6894	1490	8	1490	1	1	100.0000
ltrigg-rtg1	SNP	ti	map_l150_m1_e0	homalt	99.6993	99.5496	99.8494	70.3647	7294	33	7295	11	11	100.0000
eyeh-varpipe	SNP	tv	HG002complexvar	het	99.6993	99.8812	99.5181	20.4147	150555	179	142480	690	71	10.2899
hfeng-pmm1	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6995	99.7594	99.6396	71.1645	30687	74	30687	111	109	98.1982
eyeh-varpipe	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6996	99.6713	99.7279	30.4782	2729	9	2566	7	3	42.8571
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.6997	99.7269	99.6725	54.7543	1826	5	1826	6	1	16.6667
hfeng-pmm1	INDEL	D1_5	map_siren	homalt	99.7001	99.5719	99.8286	78.3166	1163	5	1165	2	2	100.0000
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7001	99.4290	99.9726	32.1925	7313	42	7309	2	1	50.0000
ltrigg-rtg1	INDEL	D1_5	map_siren	homalt	99.7001	99.6575	99.7427	77.3460	1164	4	1163	3	2	66.6667
jli-custom	SNP	*	map_l150_m2_e0	homalt	99.7002	99.4871	99.9142	70.0015	11639	60	11639	10	10	100.0000
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.7005	99.7006	99.7004	54.6843	1332	4	1331	4	0	0.0000
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.7010	99.6632	99.7389	50.8366	11835	40	11840	31	16	51.6129
bgallagher-sentieon	INDEL	*	HG002complexvar	homalt	99.7010	99.9186	99.4844	57.3638	27005	22	27015	140	135	96.4286
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.7011	99.6968	99.7054	51.0387	11839	36	11844	35	16	45.7143
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7012	99.8255	99.5772	47.7317	4004	7	4004	17	0	0.0000
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7012	99.7281	99.6744	30.0294	7335	20	7346	24	4	16.6667
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.7013	99.6705	99.7321	66.3966	4840	16	4840	13	10	76.9231
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7015	99.8620	99.5415	64.0336	2171	3	2171	10	0	0.0000
eyeh-varpipe	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	99.7015	100.0000	99.4048	74.4681	13	0	334	2	1	50.0000
jli-custom	INDEL	D6_15	HG002complexvar	homalt	99.7015	100.0000	99.4048	61.4173	1169	0	1169	7	7	100.0000
hfeng-pmm3	INDEL	I1_5	*	het	99.7016	99.5433	99.8604	59.2337	78680	361	78661	110	51	46.3636
hfeng-pmm1	SNP	ti	map_siren	*	99.7016	99.5376	99.8660	52.2018	99891	464	99878	134	42	31.3433
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7021	99.8478	99.5569	77.2437	656	1	674	3	3	100.0000
hfeng-pmm3	INDEL	*	*	homalt	99.7023	99.7971	99.6077	55.0410	124918	254	124928	492	475	96.5447
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.7024	99.7469	99.6579	53.4220	6699	17	6701	23	8	34.7826
ndellapenna-hhga	SNP	tv	HG002complexvar	het	99.7024	99.4520	99.9540	21.1664	149905	826	149923	69	30	43.4783
rpoplin-dv42	INDEL	D1_5	HG002complexvar	homalt	99.7026	99.6414	99.7639	58.4249	10560	38	10565	25	23	92.0000
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7031	99.4668	99.9405	63.6364	1679	9	1679	1	1	100.0000
jli-custom	SNP	*	map_l150_m2_e1	homalt	99.7034	99.4927	99.9151	70.0155	11767	60	11767	10	10	100.0000
ltrigg-rtg2	INDEL	D1_5	*	homalt	99.7038	99.4298	99.9794	54.3049	48647	279	48525	10	9	90.0000
ltrigg-rtg2	SNP	ti	map_l150_m2_e0	homalt	99.7039	99.4879	99.9209	70.3819	7577	39	7578	6	6	100.0000
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7040	99.5496	99.8589	54.8699	16355	74	16278	23	8	34.7826
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7040	99.5894	99.8189	55.7321	6063	25	6063	11	10	90.9091
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7041	99.4765	99.9327	57.5361	16343	86	16341	11	4	36.3636
jli-custom	INDEL	*	*	homalt	99.7041	99.8538	99.5548	57.2311	124989	183	124999	559	535	95.7066
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7043	99.9506	99.4592	57.8271	6069	3	6069	33	32	96.9697

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge