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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1563 1564 1565 1566 1567 1568 1569 1570 1571 ... 1720 1721 » 78301-78350 / 86044 show all
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6890	99.4621	99.9169	79.7698	2404	13	2406	2	1	50.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6891	99.3802	100.0000	59.1393	962	6	959	0	0
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6891	99.7744	99.6038	58.0494	11059	25	11062	44	20	45.4545
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.6893	99.5567	99.8222	56.6808	1123	5	1123	2	0	0.0000
raldana-dualsentieon	INDEL	I1_5	*	homalt	99.6902	99.8428	99.5381	54.0742	60333	95	60337	280	279	99.6429
ndellapenna-hhga	SNP	ti	map_l100_m0_e0	homalt	99.6905	99.4469	99.9354	59.4017	7731	43	7731	5	5	100.0000
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6905	99.8338	99.5476	42.3216	11414	19	11441	52	4	7.6923
ndellapenna-hhga	SNP	ti	map_l150_m2_e0	homalt	99.6907	99.4617	99.9209	72.2145	7575	41	7575	6	6	100.0000
gduggal-bwafb	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6908	99.5369	99.8452	60.6918	3869	18	3869	6	6	100.0000
bgallagher-sentieon	SNP	ti	map_l150_m2_e0	homalt	99.6909	99.5011	99.8814	70.4694	7578	38	7578	9	7	77.7778
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.6909	99.6293	99.7526	66.9619	4838	18	4838	12	9	75.0000
jli-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.6909	99.6293	99.7526	66.4708	4838	18	4838	12	8	66.6667
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6910	99.3840	100.0000	60.2178	484	3	475	0	0
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6915	99.4869	99.8970	58.9754	28115	145	28118	29	17	58.6207
ndellapenna-hhga	SNP	*	map_l150_m2_e0	homalt	99.6916	99.4786	99.9056	72.3853	11638	61	11638	11	10	90.9091
ndellapenna-hhga	SNP	tv	segdup	homalt	99.6917	99.8765	99.5077	90.2309	3234	4	3234	16	16	100.0000
dgrover-gatk	INDEL	I1_5	*	het	99.6919	99.6799	99.7038	61.0342	78788	253	78770	234	135	57.6923
ltrigg-rtg2	SNP	ti	map_l150_m1_e0	homalt	99.6922	99.4677	99.9178	67.8010	7288	39	7289	6	6	100.0000
raldana-dualsentieon	SNP	ti	map_l150_m1_e0	homalt	99.6923	99.4814	99.9041	67.2252	7289	38	7289	7	6	85.7143
bgallagher-sentieon	SNP	ti	map_l150_m1_e0	homalt	99.6923	99.5087	99.8767	68.0791	7291	36	7291	9	7	77.7778
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.6923	99.5392	99.8459	28.7987	3888	18	3888	6	1	16.6667
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6925	99.7409	99.6441	69.2652	3080	8	3080	11	9	81.8182
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.6927	99.4604	99.9261	41.2641	4055	22	4058	3	0	0.0000
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6927	99.4381	99.9487	76.0337	3893	22	3893	2	2	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.6929	99.6061	99.7799	36.0694	2276	9	2720	6	4	66.6667
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6929	100.0000	99.3878	67.4419	487	0	487	3	1	33.3333
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.6931	99.5186	99.8683	44.6416	2274	11	2275	3	0	0.0000
ndellapenna-hhga	SNP	tv	map_l150_m2_e0	homalt	99.6933	99.5102	99.8771	72.6980	4063	20	4063	5	4	80.0000
gduggal-snapfb	SNP	ti	segdup	homalt	99.6936	99.7335	99.6538	89.7294	7485	20	7484	26	9	34.6154
ndellapenna-hhga	SNP	ti	map_l150_m2_e1	homalt	99.6938	99.4670	99.9217	72.2586	7652	41	7652	6	6	100.0000
raldana-dualsentieon	SNP	ti	map_l150_m2_e1	homalt	99.6939	99.4800	99.9086	69.7472	7653	40	7653	7	6	85.7143
ckim-vqsr	INDEL	D1_5	*	het	99.6940	99.6963	99.6917	60.8657	87308	266	87313	270	118	43.7037
bgallagher-sentieon	INDEL	I1_5	HG002complexvar	*	99.6940	99.5564	99.8319	56.9171	33215	148	33263	56	45	80.3571
bgallagher-sentieon	SNP	ti	map_l150_m2_e1	homalt	99.6940	99.5060	99.8826	70.5038	7655	38	7655	9	7	77.7778
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6940	99.3898	100.0000	34.8326	1303	8	1304	0	0
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6944	99.7089	99.6800	57.2704	17127	50	17130	55	30	54.5455
ndellapenna-hhga	SNP	*	map_l150_m2_e1	homalt	99.6950	99.4842	99.9066	72.4121	11766	61	11766	11	10	90.9091
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6951	99.7767	99.6136	53.1211	6701	15	6703	26	9	34.6154
jli-custom	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6951	99.8992	99.4918	73.2959	30730	31	30737	157	151	96.1783
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6953	99.4211	99.9709	62.6075	3435	20	3435	1	1	100.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6954	99.5943	99.7967	57.2917	491	2	491	1	0	0.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6954	99.5943	99.7967	58.4810	491	2	491	1	0	0.0000
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6954	99.4790	99.9128	62.0351	3437	18	3437	3	3	100.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6954	99.5943	99.7967	54.9038	491	2	491	1	0	0.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6954	99.5943	99.7967	58.4810	491	2	491	1	0	0.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6954	99.5943	99.7967	57.4026	491	2	491	1	0	0.0000
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.6954	99.6733	99.7175	49.5386	6711	22	6707	19	12	63.1579
gduggal-bwafb	SNP	*	*	het	99.6957	99.8616	99.5303	23.9839	1871007	2594	1871215	8830	595	6.7384
jmaeng-gatk	INDEL	D1_5	HG002complexvar	het	99.6962	99.5666	99.8262	56.4161	20675	90	20679	36	18	50.0000
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6964	99.7792	99.6138	75.7541	3615	8	3611	14	6	42.8571

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