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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
78251-78300 / 86044 show all
rpoplin-dv42SNPtvsegdup*
99.6835
99.6835
99.6834
91.0590
85052785012712
44.4444
hfeng-pmm1INDEL**homalt
99.6836
99.7787
99.5886
55.4406
124895277124903516501
97.0930
hfeng-pmm3SNP*map_sirenhet
99.6837
99.5824
99.7852
54.5786
906113809059719518
9.2308
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.6837
99.7394
99.6281
54.8750
267972679102
20.0000
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.6838
99.6701
99.6976
61.7359
1087536108783321
63.6364
hfeng-pmm3SNPtimap_sirenhet
99.6838
99.5672
99.8007
53.2950
621122706210312411
8.8710
ltrigg-rtg1INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6839
99.4064
99.9631
71.3354
217691302165588
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6839
99.4502
99.9188
54.8820
615034615050
0.0000
cchapple-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6843
99.4279
99.9421
53.0723
173810172511
100.0000
gduggal-bwafbSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.6843
99.5795
99.7893
29.7830
14216142131
33.3333
bgallagher-sentieonSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6844
99.3707
100.0000
60.6925
173711173700
qzeng-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.6848
99.5401
99.8300
56.5387
170987917030299
31.0345
jli-customSNPtvmap_l150_m2_e1homalt
99.6848
99.4678
99.9028
70.2106
411222411244
100.0000
hfeng-pmm2SNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6849
99.5423
99.8279
67.4388
17408174031
33.3333
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6854
99.4272
99.9450
44.5461
364521363322
100.0000
hfeng-pmm3SNPtvmap_l150_m2_e1homalt
99.6855
99.6613
99.7096
73.9141
4120144120124
33.3333
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6855
99.5812
99.7901
80.3667
951495121
50.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6855
99.5812
99.7901
80.3667
951495121
50.0000
ckim-vqsrINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6856
99.9087
99.4636
76.0319
218792021879118117
99.1525
ckim-dragenINDELI1_5HG002complexvarhet
99.6858
99.5712
99.8007
57.6433
1811178180303622
61.1111
hfeng-pmm2SNPtimap_siren*
99.6860
99.6642
99.7079
54.6933
10001833710000329339
13.3106
dgrover-gatkINDEL*HG002complexvarhet
99.6862
99.5586
99.8141
57.9282
46008204456348551
60.0000
astatham-gatkINDELD1_5HG002complexvarhet
99.6863
99.4751
99.8985
56.1634
20656109206622112
57.1429
qzeng-customSNP*func_cdshet
99.6863
99.8118
99.5610
32.9992
111402111112491
2.0408
ndellapenna-hhgaINDELD1_5func_cds*
99.6865
100.0000
99.3750
33.0544
159015910
0.0000
egarrison-hhgaINDELD1_5func_cds*
99.6865
100.0000
99.3750
33.6100
159015910
0.0000
ltrigg-rtg2SNP*func_cds*
99.6865
99.8678
99.5059
22.3605
181262418125901
1.1111
jli-customINDELD1_5func_cds*
99.6865
100.0000
99.3750
37.9845
159015910
0.0000
jmaeng-gatkSNPtvHG002complexvarhet
99.6867
99.4221
99.9526
22.2557
1498608711497827116
22.5352
jli-customSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.6872
99.6632
99.7112
69.9339
62152162151812
66.6667
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.6872
99.5842
99.7904
53.5992
479247611
100.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.6872
99.3763
100.0000
45.8664
478347800
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6875
99.4266
99.9499
46.9556
398823398820
0.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.6877
99.7767
99.5988
53.6597
6701156703278
29.6296
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6878
99.7917
99.5842
69.2913
14373143760
0.0000
hfeng-pmm3INDEL*segduphomalt
99.6878
99.7917
99.5842
93.0376
958295843
75.0000
hfeng-pmm1INDEL*segduphomalt
99.6878
99.7917
99.5842
93.1783
958295844
100.0000
hfeng-pmm2SNPtvmap_l100_m0_e0homalt
99.6880
99.6880
99.6880
65.5500
3834123834124
33.3333
hfeng-pmm1SNPtvmap_l100_m0_e0homalt
99.6880
99.6880
99.6880
65.4385
3834123834124
33.3333
jlack-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.6881
99.4907
99.8864
60.3693
17589175822
100.0000
hfeng-pmm2SNPtimap_l125_m0_e0homalt
99.6883
99.7105
99.6661
69.9826
4478134478156
40.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6883
99.9306
99.4471
68.6661
14391143980
0.0000
hfeng-pmm1INDELD1_5func_cds*
99.6885
100.0000
99.3789
38.0769
159016010
0.0000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.6885
99.4406
99.9375
43.4875
16009160011
100.0000
ckim-vqsrINDELD1_5func_cds*
99.6885
100.0000
99.3789
53.3333
159016010
0.0000
ckim-gatkINDELD1_5func_cds*
99.6885
100.0000
99.3789
53.3333
159016010
0.0000
cchapple-customINDELD1_5func_cds*
99.6885
100.0000
99.3789
32.9167
159016010
0.0000
ckim-gatkSNPtifunc_cds*
99.6887
99.8912
99.4870
29.0714
137721513770711
1.4085
qzeng-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.6888
99.5692
99.8086
46.3323
6241276258122
16.6667
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6889
99.4208
99.9584
73.0221
240314240311
100.0000