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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1558 1559 1560 1561 1562 1563 1564 1565 1566 ... 1720 1721 » 78051-78100 / 86044 show all
egarrison-hhga	SNP	tv	map_l125_m0_e0	homalt	99.6615	99.4147	99.9095	69.6595	2208	13	2208	2	2	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6618	99.7743	99.5495	35.0877	442	1	442	2	2	100.0000
ckim-gatk	SNP	*	func_cds	*	99.6618	99.8678	99.4567	31.5863	18126	24	18123	99	1	1.0101
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6618	99.7743	99.5495	35.0877	442	1	442	2	2	100.0000
hfeng-pmm3	INDEL	*	func_cds	*	99.6618	99.3258	100.0000	42.1121	442	3	444	0	0
hfeng-pmm3	SNP	*	map_l100_m1_e0	*	99.6620	99.5870	99.7371	63.4436	72104	299	72093	190	31	16.3158
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.6621	99.8310	99.4938	54.7565	2954	5	2948	15	1	6.6667
eyeh-varpipe	SNP	*	map_l100_m1_e0	hetalt	99.6622	100.0000	99.3266	65.7044	41	0	295	2	1	50.0000
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6624	99.7383	99.5867	60.0529	16386	43	16385	68	18	26.4706
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6626	99.4266	99.8998	45.8345	3988	23	3988	4	0	0.0000
hfeng-pmm2	SNP	tv	map_siren	*	99.6626	99.6995	99.6257	59.0414	45792	138	45784	172	23	13.3721
bgallagher-sentieon	INDEL	I1_5	*	het	99.6628	99.6660	99.6596	60.0640	78777	264	78760	269	153	56.8773
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6632	99.5223	99.8044	57.7539	28125	135	28578	56	39	69.6429
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6636	99.8179	99.5098	78.3746	548	1	609	3	2	66.6667
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6636	99.5017	99.8260	39.5847	4593	23	4589	8	3	37.5000
ltrigg-rtg2	SNP	*	map_l125_m0_e0	homalt	99.6639	99.4041	99.9251	65.7800	6672	40	6672	5	4	80.0000
ltrigg-rtg2	SNP	*	map_l250_m2_e0	homalt	99.6642	99.4415	99.8878	85.5934	2671	15	2671	3	3	100.0000
jlack-gatk	INDEL	D1_5	*	homalt	99.6645	99.8651	99.4647	59.9060	48860	66	48867	263	260	98.8593
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6646	99.3826	99.9483	59.5457	3863	24	3863	2	2	100.0000
jli-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6647	99.7834	99.5462	33.7248	4606	10	4607	21	2	9.5238
ltrigg-rtg1	SNP	*	func_cds	*	99.6647	99.8898	99.4405	22.8252	18130	20	18129	102	1	0.9804
bgallagher-sentieon	SNP	ti	map_l100_m0_e0	homalt	99.6648	99.4469	99.8837	59.2653	7731	43	7731	9	7	77.7778
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6651	99.7679	99.5625	58.6903	3869	9	3869	17	0	0.0000
hfeng-pmm3	SNP	*	map_l100_m2_e0	*	99.6651	99.5917	99.7386	65.1842	73662	302	73651	193	31	16.0622
jmaeng-gatk	SNP	ti	*	het	99.6655	99.6418	99.6893	25.0371	1277299	4592	1277249	3981	127	3.1902
rpoplin-dv42	SNP	ti	map_l100_m1_e0	homalt	99.6655	99.5323	99.7990	60.4404	17876	84	17877	36	34	94.4444
ltrigg-rtg1	SNP	ti	map_l125_m0_e0	homalt	99.6656	99.5324	99.7991	68.6301	4470	21	4470	9	9	100.0000
hfeng-pmm3	SNP	ti	map_l125_m0_e0	homalt	99.6659	99.6437	99.6881	69.8765	4475	16	4475	14	5	35.7143
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6662	99.3697	99.9644	66.5145	16868	107	16868	6	6	100.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6662	99.3697	99.9644	66.5145	16868	107	16868	6	6	100.0000
rpoplin-dv42	SNP	ti	map_l100_m2_e0	homalt	99.6664	99.5412	99.7919	62.9736	18225	84	18226	38	36	94.7368
jli-custom	INDEL	I1_5	HG002complexvar	het	99.6665	99.4282	99.9059	56.5291	18085	104	18053	17	9	52.9412
ckim-gatk	INDEL	*	HG002complexvar	het	99.6665	99.5780	99.7552	57.8728	46017	195	45636	112	64	57.1429
hfeng-pmm3	SNP	*	map_l100_m2_e1	*	99.6666	99.5946	99.7387	65.1913	74434	303	74423	195	31	15.8974
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.6666	99.6812	99.6520	39.8884	3439	11	3436	12	2	16.6667
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.6666	99.6190	99.7143	62.5668	1046	4	1047	3	3	100.0000
rpoplin-dv42	SNP	ti	map_l100_m2_e1	homalt	99.6670	99.5404	99.7940	62.9692	18409	85	18410	38	36	94.7368
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.6672	99.8841	99.4512	37.3053	3446	4	3443	19	2	10.5263
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6673	99.8600	99.4754	57.8446	17826	25	17825	94	5	5.3192
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6673	99.4468	99.8889	71.7685	5393	30	5393	6	6	100.0000
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6673	99.4468	99.8889	71.7685	5393	30	5393	6	6	100.0000
gduggal-bwafb	SNP	ti	func_cds	*	99.6673	99.9492	99.3869	27.6810	13780	7	13780	85	2	2.3529
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6674	99.7924	99.5426	42.2165	6730	14	6747	31	2	6.4516
egarrison-hhga	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6677	99.5048	99.8311	60.3522	10047	50	10048	17	14	82.3529
qzeng-custom	SNP	tv	func_cds	*	99.6678	99.6797	99.6560	35.7311	4357	14	4345	15	0	0.0000
jli-custom	SNP	*	map_l100_m0_e0	homalt	99.6679	99.4234	99.9135	58.5496	11553	67	11553	10	10	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.6680	99.4113	99.9261	41.1569	4053	24	4056	3	0	0.0000
ltrigg-rtg2	SNP	*	map_l250_m2_e1	homalt	99.6681	99.4481	99.8891	85.6712	2703	15	2703	3	3	100.0000
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6683	99.5308	99.8063	75.9886	3606	17	3606	7	5	71.4286
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6683	99.4621	99.8754	72.2887	2404	13	2404	3	3	100.0000

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