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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1556 1557 1558 1559 1560 1561 1562 1563 1564 ... 1720 1721 » 77951-78000 / 86044 show all
ltrigg-rtg1	SNP	*	map_l250_m2_e0	homalt	99.6459	99.5160	99.7760	87.2925	2673	13	2673	6	6	100.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6460	99.8227	99.4700	72.0632	563	1	563	3	3	100.0000
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6460	99.6990	99.5931	55.9882	11262	34	11258	46	37	80.4348
ckim-gatk	SNP	*	*	*	99.6466	99.4788	99.8150	23.5123	3038698	15921	3038552	5632	250	4.4389
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6468	99.8821	99.4127	54.4823	2541	3	2539	15	1	6.6667
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.6468	99.5944	99.6992	79.9741	6630	27	6628	20	11	55.0000
jli-custom	INDEL	D1_5	*	*	99.6468	99.4746	99.8195	58.9401	145974	771	146018	264	201	76.1364
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6469	99.8428	99.4518	52.6335	2540	4	2540	14	2	14.2857
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6469	99.8428	99.4518	50.2823	2540	4	2540	14	0	0.0000
asubramanian-gatk	SNP	*	func_cds	*	99.6470	99.5537	99.7405	30.0602	18069	81	18066	47	1	2.1277
dgrover-gatk	SNP	tv	HG002compoundhet	het	99.6470	99.6790	99.6151	55.4242	4658	15	4658	18	10	55.5556
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6471	99.4131	99.8821	84.7756	847	5	847	1	1	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6475	99.7647	99.5305	50.8083	848	2	848	4	4	100.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6475	99.7647	99.5305	49.7048	848	2	848	4	4	100.0000
asubramanian-gatk	INDEL	D1_5	*	homalt	99.6476	99.6668	99.6283	62.3701	48763	163	48779	182	169	92.8571
eyeh-varpipe	SNP	tv	map_l250_m1_e0	homalt	99.6477	99.5327	99.7630	89.0347	852	4	842	2	2	100.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6479	99.8824	99.4145	51.1721	849	1	849	5	5	100.0000
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.6481	99.5697	99.7266	69.7354	31009	134	31007	85	34	40.0000
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.6481	99.5697	99.7266	69.7354	31009	134	31007	85	34	40.0000
gduggal-bwaplat	SNP	ti	func_cds	homalt	99.6481	99.2986	100.0000	20.6003	5238	37	5238	0	0
jli-custom	SNP	tv	map_l100_m0_e0	homalt	99.6481	99.4020	99.8955	59.7962	3823	23	3823	4	4	100.0000
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.6482	99.3452	99.9530	35.3102	2124	14	2126	1	1	100.0000
ndellapenna-hhga	SNP	tv	map_l100_m0_e0	homalt	99.6482	99.4280	99.8694	61.5639	3824	22	3824	5	3	60.0000
bgallagher-sentieon	SNP	tv	map_l150_m2_e1	homalt	99.6486	99.4678	99.8301	71.0988	4112	22	4112	7	5	71.4286
ltrigg-rtg1	SNP	tv	map_l250_m1_e0	homalt	99.6487	99.4159	99.8826	86.0259	851	5	851	1	1	100.0000
hfeng-pmm3	SNP	tv	map_l100_m0_e0	homalt	99.6488	99.6100	99.6877	65.3002	3831	15	3831	12	4	33.3333
jli-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6490	99.5246	99.7737	73.4430	33078	158	33071	75	56	74.6667
rpoplin-dv42	SNP	*	HG002compoundhet	*	99.6493	99.5895	99.7091	40.7188	25716	106	25707	75	61	81.3333
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.6495	99.7661	99.5333	55.1309	853	2	853	4	1	25.0000
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.6495	99.4172	99.8828	51.6714	853	5	852	1	0	0.0000
rpoplin-dv42	SNP	tv	segdup	het	99.6497	99.5839	99.7157	91.3241	5265	22	5261	15	0	0.0000
dgrover-gatk	INDEL	D1_5	HG002complexvar	*	99.6498	99.5323	99.7675	58.6672	32562	153	32617	76	66	86.8421
qzeng-custom	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6500	99.6294	99.6706	40.2309	6720	25	6656	22	11	50.0000
jmaeng-gatk	SNP	ti	*	*	99.6502	99.4959	99.8049	21.8521	2074998	10513	2074939	4056	178	4.3886
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.6503	99.6503	99.6503	49.2608	855	3	855	3	3	100.0000
jmaeng-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.6504	99.6818	99.6191	61.4842	55454	177	55443	212	23	10.8491
bgallagher-sentieon	SNP	*	map_l100_m0_e0	homalt	99.6507	99.4320	99.8703	60.0283	11554	66	11554	15	11	73.3333
eyeh-varpipe	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	99.6508	100.0000	99.3039	77.5052	13	0	428	3	2	66.6667
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6510	99.4206	99.8824	57.6060	858	5	849	1	1	100.0000
jlack-gatk	SNP	*	HG002compoundhet	hetalt	99.6512	99.4200	99.8834	22.4231	857	5	857	1	1	100.0000
jlack-gatk	SNP	tv	HG002compoundhet	hetalt	99.6512	99.4200	99.8834	22.4231	857	5	857	1	1	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6516	99.4206	99.8837	61.5213	858	5	859	1	1	100.0000
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6522	99.4792	99.8258	69.0232	573	3	573	1	1	100.0000
rpoplin-dv42	SNP	tv	HG002compoundhet	*	99.6523	99.5965	99.7081	48.4905	8887	36	8880	26	19	73.0769
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.6524	99.3882	99.9179	31.7465	7310	45	7306	6	1	16.6667
jli-custom	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.6524	99.7101	99.5947	36.6587	3440	10	3440	14	2	14.2857
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6526	99.6524	99.6528	63.6057	860	3	861	3	2	66.6667
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6527	99.7736	99.5322	54.5761	6170	14	6170	29	0	0.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6528	99.6528	99.6528	69.7320	574	2	574	2	2	100.0000
asubramanian-gatk	SNP	ti	func_cds	het	99.6530	99.6472	99.6589	31.5760	8474	30	8472	29	1	3.4483

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