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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
77801-77850 / 86044 show all
hfeng-pmm3SNPtvsegduphet
99.6218
99.6974
99.5464
90.8847
5271165267240
0.0000
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.6218
99.4099
99.8345
72.5123
539132543090
0.0000
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.6218
99.4099
99.8345
72.5123
539132543090
0.0000
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6218
100.0000
99.2465
77.6468
922092273
42.8571
bgallagher-sentieonSNPtvmap_l100_m0_e0homalt
99.6221
99.4020
99.8433
61.4866
382323382364
66.6667
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6222
99.3336
99.9125
51.6616
25190169251132214
63.6364
egarrison-hhgaSNPtvmap_l150_m0_e0homalt
99.6224
99.3223
99.9242
75.6143
13199131911
100.0000
rpoplin-dv42SNP*map_siren*
99.6224
99.5097
99.7354
54.5067
145511717145497386225
58.2902
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.6224
99.6697
99.5753
80.0565
42241442201810
55.5556
ltrigg-rtg2SNPtvmap_l150_m0_e0homalt
99.6224
99.3223
99.9242
72.7891
13199131910
0.0000
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6226
99.3415
99.9054
80.1278
10567105611
100.0000
hfeng-pmm1INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
99.6226
99.2481
100.0000
62.3932
396339600
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6226
99.6991
99.5463
74.7408
3313610033130151120
79.4702
hfeng-pmm2INDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6231
99.4357
99.8113
69.4243
264315264552
40.0000
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6234
99.7183
99.5287
62.3224
10623105653
60.0000
hfeng-pmm2INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
99.6236
99.4987
99.7487
63.6197
397239711
100.0000
raldana-dualsentieonINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
99.6236
99.4987
99.7487
64.4007
397239710
0.0000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.6239
99.8416
99.4072
41.3357
107151710732647
10.9375
ckim-gatkSNPti*homalt
99.6240
99.2571
99.9936
16.1503
79707259667970635133
64.7059
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.6240
99.5376
99.7106
36.1655
17228172355
100.0000
rpoplin-dv42INDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6241
99.2509
100.0000
64.3909
265226600
egarrison-hhgaSNPtvmap_siren*
99.6246
99.3686
99.8818
55.8072
45640290456405425
46.2963
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6247
99.3452
99.9058
74.7803
212414212221
50.0000
jli-customINDELI1_5map_l100_m2_e0homalt
99.6248
100.0000
99.2523
80.8106
531053143
75.0000
hfeng-pmm1SNP*segduphet
99.6248
99.6939
99.5558
89.5848
172645317258770
0.0000
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.6249
99.5200
99.7301
51.4696
1181857118233215
46.8750
astatham-gatkINDELI1_5HG002complexvarhet
99.6251
99.3568
99.8949
58.0548
1807211718051199
47.3684
cchapple-customINDELI6_15segduphet
99.6255
100.0000
99.2537
92.8034
83013310
0.0000
dgrover-gatkSNPtvmap_siren*
99.6255
99.6408
99.6103
59.7727
457651654575717935
19.5531
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6255
99.4585
99.7930
57.9022
385721385780
0.0000
astatham-gatkSNPtimap_l100_m1_e0homalt
99.6258
99.3318
99.9216
57.0466
17840120178401413
92.8571
ltrigg-rtg2SNPtimap_l250_m1_e0homalt
99.6259
99.4400
99.8126
84.3683
15989159833
100.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.6260
99.6141
99.6379
82.9126
4130164128158
53.3333
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.6261
99.8129
99.4400
42.7465
213442131122
16.6667
jmaeng-gatkSNP**het
99.6262
99.6225
99.6299
27.1537
1866514707318663916934179
2.5815
ltrigg-rtg1SNPtimap_l250_m1_e0homalt
99.6262
99.5022
99.7505
86.3540
15998159944
100.0000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6262
99.2553
100.0000
69.5205
239918237100
jmaeng-gatkSNPti*homalt
99.6264
99.2642
99.9912
16.0789
79712959097971207046
65.7143
ckim-gatkINDELD1_5*het
99.6268
99.8162
99.4381
60.7761
8741316187419494126
25.5061
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.2060
267026722
100.0000
raldana-dualsentieonINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
64.4180
267026722
100.0000
astatham-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.2907
267026722
100.0000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.1635
267026722
100.0000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.2060
267026722
100.0000
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.5423
267026722
100.0000
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6270
99.8753
99.3798
50.2161
400654006251
4.0000
dgrover-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6271
99.6871
99.5672
75.3638
3313210433126144110
76.3889
rpoplin-dv42INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6271
99.4292
99.8258
72.6049
21774125217713837
97.3684
hfeng-pmm3SNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6272
99.3707
99.8850
65.1363
173711173721
50.0000
hfeng-pmm2SNP*map_l125_m0_e0homalt
99.6276
99.6573
99.5980
70.8911
66892366892710
37.0370