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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
77751-77800 / 86044 show all
jmaeng-gatkSNP***
99.6144
99.4608
99.7686
23.7289
30381471647230380017046253
3.5907
dgrover-gatkINDELD1_5**
99.6144
99.5271
99.7018
60.8244
146051694146107437317
72.5400
astatham-gatkINDELD1_5map_sirenhomalt
99.6154
99.6575
99.5734
81.2660
11644116754
80.0000
jli-customINDELI1_5map_l100_m1_e0homalt
99.6154
100.0000
99.2337
79.2939
518051843
75.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6156
99.2848
99.9486
75.9210
388728388722
100.0000
hfeng-pmm1INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6156
99.4518
99.7800
65.1991
907590721
50.0000
astatham-gatkSNP*map_l100_m2_e1homalt
99.6157
99.3200
99.9131
60.3111
27607189276072419
79.1667
astatham-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.6158
99.2821
99.9518
44.5938
622345622332
66.6667
astatham-gatkSNPti**
99.6161
99.2515
99.9833
17.5605
2069900156112069836345101
29.2754
ckim-vqsrINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.6165
99.4259
99.8079
54.6157
363721363672
28.5714
raldana-dualsentieonSNPtvmap_l125_m0_e0homalt
99.6165
99.4147
99.8192
66.9456
220813220842
50.0000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.6169
99.5602
99.6736
72.0020
455012014549714951
34.2282
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.6169
99.5602
99.6736
72.0020
455012014549714951
34.2282
asubramanian-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6169
99.2366
100.0000
64.2366
520452000
hfeng-pmm1SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6176
99.4275
99.8084
67.3342
521352111
100.0000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6177
99.5139
99.7216
67.7875
14337143340
0.0000
cchapple-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.6177
99.6495
99.5860
52.1198
27861982790311633
28.4483
bgallagher-sentieonINDELD1_5HG002complexvar*
99.6177
99.4956
99.7400
58.4446
32550165326058576
89.4118
ckim-dragenSNPtimap_l100_m2_e1homalt
99.6178
99.3565
99.8804
57.3860
18375119183802220
90.9091
hfeng-pmm1SNPtisegduphet
99.6179
99.7007
99.5352
89.0346
119943611992560
0.0000
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.6180
99.4911
99.7452
67.3461
782478320
0.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6181
99.8906
99.3471
70.2781
913191360
0.0000
bgallagher-sentieonSNPtimap_siren*
99.6181
99.6801
99.5561
54.0168
10003432110001944666
14.7982
hfeng-pmm2SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6183
99.6183
99.6183
69.2308
522252221
50.0000
raldana-dualsentieonSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6183
99.6183
99.6183
63.0465
522252221
50.0000
rpoplin-dv42SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6183
99.6183
99.6183
66.9401
522252221
50.0000
ckim-dragenINDEL*HG002complexvarhet
99.6184
99.4569
99.7805
57.4574
459612514545810050
50.0000
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6187
99.3868
99.8516
38.0325
405225403862
33.3333
astatham-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6188
99.5238
99.7140
62.1846
10455104633
100.0000
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.6190
99.6190
99.6190
68.6754
523252321
50.0000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.6190
99.4381
99.8005
49.8273
1468783155113120
64.5161
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6192
99.8219
99.4173
56.4253
392473924230
0.0000
raldana-dualsentieonSNP*map_l125_m0_e0homalt
99.6192
99.3892
99.8503
65.6627
6671416671107
70.0000
ckim-dragenSNPtimap_l100_m2_e0homalt
99.6194
99.3610
99.8792
57.3994
18192117181972220
90.9091
jpowers-varprowlSNPtimap_sirenhomalt
99.6196
99.4567
99.7830
54.0684
37710206377118257
69.5122
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6198
99.6956
99.5441
80.5441
655265531
33.3333
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6198
99.6956
99.5441
79.9635
655265533
100.0000
hfeng-pmm3SNPtimap_l150_m0_e0homalt
99.6199
99.6740
99.5658
75.7331
275292752124
33.3333
hfeng-pmm1SNPtimap_l150_m0_e0homalt
99.6199
99.6740
99.5658
75.8370
275292752124
33.3333
egarrison-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6200
99.3718
99.8694
32.0414
458729458862
33.3333
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.6201
99.3057
99.9365
31.9250
472033471833
100.0000
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.6201
99.5533
99.6870
54.4597
6686306688217
33.3333
ghariani-varprowlSNPtifunc_cds*
99.6201
99.8549
99.3864
28.0976
137672013767859
10.5882
raldana-dualsentieonSNPtimap_l125_m0_e0homalt
99.6205
99.3765
99.8657
64.9902
446328446365
83.3333
qzeng-customSNPti*homalt
99.6207
99.3383
99.9047
15.9860
7977255314792891756473
62.5661
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6207
99.7468
99.4949
51.0355
15764157680
0.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.6208
99.3177
99.9258
72.3505
538637538644
100.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.6208
99.3177
99.9258
72.3505
538637538644
100.0000
gduggal-bwafbSNP*func_cds*
99.6211
99.9504
99.2939
30.1552
181419181411292
1.5504
jli-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.6216
99.8758
99.3687
35.8426
7238972414644
95.6522