PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1550 1551 1552 1553 1554 1555 1556 1557 1558 ... 1720 1721 » 77651-77700 / 86044 show all
astatham-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5983	99.6119	99.5848	74.9525	33107	129	33101	138	106	76.8116
jlack-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5984	99.3135	99.8849	60.1010	1736	12	1736	2	2	100.0000
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.5984	99.3324	99.8658	78.7628	1488	10	1488	2	2	100.0000
gduggal-bwafb	SNP	*	*	hetalt	99.5989	99.7704	99.4279	53.2620	869	2	869	5	5	100.0000
gduggal-bwafb	SNP	tv	*	hetalt	99.5989	99.7704	99.4279	53.2620	869	2	869	5	5	100.0000
dgrover-gatk	INDEL	*	*	het	99.5990	99.6559	99.5422	61.2168	193465	668	193091	888	555	62.5000
cchapple-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5991	99.7991	99.4000	72.8360	21855	44	21701	131	126	96.1832
bgallagher-sentieon	SNP	*	map_siren	*	99.5992	99.6902	99.5084	55.5562	145775	453	145752	720	102	14.1667
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5993	99.5000	99.6988	76.7994	2985	15	2979	9	4	44.4444
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5997	99.7468	99.4531	47.3533	2364	6	2364	13	13	100.0000
ckim-vqsr	INDEL	I1_5	*	het	99.5998	99.5116	99.6881	61.9903	78655	386	78634	246	145	58.9431
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.5998	99.2908	99.9108	42.6598	1120	8	1120	1	1	100.0000
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.5998	99.7544	99.4458	51.6487	10153	25	10587	59	58	98.3051
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5999	99.7890	99.4115	47.4486	2365	5	2365	14	13	92.8571
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6000	99.6361	99.5640	74.0720	1369	5	1370	6	0	0.0000
gduggal-snapfb	SNP	*	segdup	homalt	99.6002	99.7114	99.4891	90.4625	10712	31	10711	55	17	30.9091
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6003	99.4016	99.7997	45.8452	3987	24	3987	8	0	0.0000
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6003	99.6750	99.5257	31.5929	4601	15	4616	22	2	9.0909
jli-custom	SNP	ti	map_l150_m0_e0	homalt	99.6006	99.3481	99.8544	71.0140	2743	18	2743	4	4	100.0000
gduggal-bwafb	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6007	99.4924	99.7093	41.1337	2744	14	2744	8	5	62.5000
jlack-gatk	SNP	*	map_siren	homalt	99.6008	99.2857	99.9179	50.5286	54762	394	54753	45	30	66.6667
ltrigg-rtg1	SNP	ti	func_cds	het	99.6011	99.8471	99.3563	21.6630	8491	13	8490	55	1	1.8182
eyeh-varpipe	SNP	*	map_l100_m0_e0	hetalt	99.6016	100.0000	99.2063	70.4918	16	0	125	1	0	0.0000
rpoplin-dv42	INDEL	*	HG002complexvar	homalt	99.6016	99.4265	99.7773	55.5190	26872	155	26879	60	53	88.3333
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6017	99.5025	99.7012	65.7688	1000	5	1001	3	2	66.6667
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6018	99.6636	99.5400	55.7604	11258	38	11253	52	41	78.8462
hfeng-pmm1	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6018	99.6976	99.5062	56.7205	3627	11	3627	18	18	100.0000
hfeng-pmm2	SNP	ti	map_l150_m0_e0	homalt	99.6019	99.6740	99.5298	75.8368	2752	9	2752	13	5	38.4615
hfeng-pmm2	INDEL	I1_5	*	het	99.6023	99.4952	99.7096	59.9116	78642	399	78624	229	130	56.7686
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6029	99.2089	100.0000	43.0390	3637	29	3625	0	0
egarrison-hhga	SNP	*	segdup	*	99.6030	99.6793	99.5269	89.4388	27977	90	27977	133	40	30.0752
jlack-gatk	SNP	ti	map_siren	homalt	99.6031	99.2879	99.9204	49.0602	37646	270	37640	30	20	66.6667
jli-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6032	99.8263	99.3810	56.4884	17820	31	17821	111	6	5.4054
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6034	99.3181	99.8903	51.3153	3641	25	3642	4	4	100.0000
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6035	99.5149	99.6923	54.6489	6154	30	6156	19	5	26.3158
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.6037	99.7194	99.4884	35.8783	2132	6	2139	11	2	18.1818
cchapple-custom	SNP	ti	segdup	*	99.6040	99.8311	99.3779	91.2552	19504	33	19490	122	16	13.1148
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6041	99.3604	99.8489	69.0699	2641	17	2643	4	2	50.0000
raldana-dualsentieon	SNP	ti	segdup	*	99.6041	99.8055	99.4035	89.2386	19499	38	19497	117	4	3.4188
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6042	99.3980	99.8112	69.7820	2642	16	2643	5	3	60.0000
bgallagher-sentieon	SNP	tv	HG002compoundhet	het	99.6043	99.6576	99.5511	55.0192	4657	16	4657	21	5	23.8095
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.6047	99.4083	99.8020	85.1950	504	3	504	1	0	0.0000
ltrigg-rtg1	SNP	ti	map_l250_m2_e1	homalt	99.6047	99.5485	99.6610	87.3743	1764	8	1764	6	6	100.0000
ghariani-varprowl	SNP	*	HG002complexvar	homalt	99.6051	99.9428	99.2696	21.6199	288407	165	288526	2123	1441	67.8756
hfeng-pmm1	SNP	*	map_l125_m0_e0	homalt	99.6052	99.5977	99.6126	70.8610	6685	27	6685	26	9	34.6154
hfeng-pmm1	SNP	tv	map_l100_m1_e0	*	99.6055	99.4531	99.7584	64.1006	24367	134	24363	59	17	28.8136
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6057	99.2925	99.9209	50.5187	2526	18	2526	2	0	0.0000
ltrigg-rtg1	INDEL	*	*	homalt	99.6060	99.3824	99.8305	54.1259	124398	773	124268	211	185	87.6777
gduggal-bwafb	SNP	tv	map_l100_m1_e0	homalt	99.6065	99.3586	99.8555	63.7543	8985	58	8985	13	7	53.8462
gduggal-bwafb	SNP	tv	map_l100_m2_e1	homalt	99.6066	99.3550	99.8595	65.9755	9242	60	9242	13	7	53.8462

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge