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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
77501-77550 / 86044 show all
jmaeng-gatkSNPtiHG002complexvar*
99.5813
99.1995
99.9661
17.9457
504366407050430617177
45.0292
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5813
99.8219
99.3418
57.3342
392473924261
3.8462
hfeng-pmm1SNP*map_l100_m1_e0*
99.5814
99.3868
99.7767
62.8958
719594447194816149
30.4348
ndellapenna-hhgaSNP*map_l125_m0_e0homalt
99.5815
99.2700
99.8951
66.7961
666349666376
85.7143
mlin-fermikitINDELI1_5func_cdshomalt
99.5816
100.0000
99.1667
24.5283
119011911
100.0000
asubramanian-gatkINDELD1_5segduphomalt
99.5816
99.4429
99.7207
94.5193
357235711
100.0000
jli-customSNP*map_l125_m0_e0homalt
99.5817
99.2998
99.8651
65.5375
666547666599
100.0000
ghariani-varprowlSNPtisegduphomalt
99.5818
99.9334
99.2326
88.7647
7500575005836
62.0690
dgrover-gatkINDEL**homalt
99.5819
99.8906
99.2752
59.0938
125035137125045913890
97.4808
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.5820
99.5816
99.5825
75.9054
476247722
100.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5824
99.4333
99.7320
76.7777
298317297784
50.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5825
99.3750
99.7908
68.8193
14319143130
0.0000
astatham-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
99.5825
99.2217
99.9459
39.6327
739458739141
25.0000
ltrigg-rtg2INDEL*segduphomalt
99.5827
99.4792
99.6865
92.2340
955595433
100.0000
ndellapenna-hhgaINDELD1_5segduphomalt
99.5828
99.7214
99.4444
94.2939
358135822
100.0000
jlack-gatkINDELD1_5segduphomalt
99.5828
99.7214
99.4444
94.1766
358135822
100.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5829
99.5667
99.5991
76.3025
2987132981124
33.3333
jmaeng-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5829
99.6423
99.5235
65.6204
27579992756913213
9.8485
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.5833
99.3763
99.7912
54.8113
478347810
0.0000
ltrigg-rtg1SNP*map_l150_m0_e0homalt
99.5834
99.3886
99.7790
75.2221
406425406399
100.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.5837
99.2071
99.9631
70.9548
538043541920
0.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5837
99.2071
99.9631
70.9548
538043541920
0.0000
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5837
99.9406
99.2292
75.9456
218861321886170169
99.4118
hfeng-pmm3SNPtimap_l125_m1_e0*
99.5837
99.4989
99.6687
69.3283
29188147291849716
16.4948
ckim-dragenSNPtvmap_l125_m2_e0homalt
99.5838
99.4183
99.7499
65.0891
59823559821513
86.6667
hfeng-pmm2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.5839
99.4460
99.7222
61.9048
359235911
100.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.5839
99.7222
99.4460
87.8981
718271844
100.0000
cchapple-customINDEL*segduphomalt
99.5843
99.8958
99.2746
93.0445
959195877
100.0000
astatham-gatkSNPtvmap_l100_m2_e1homalt
99.5848
99.2797
99.8918
61.7406
9235679235106
60.0000
hfeng-pmm1SNP*map_l150_m0_e0homalt
99.5848
99.7065
99.4633
76.6851
4077124077227
31.8182
ltrigg-rtg1INDELI1_5map_sirenhomalt
99.5850
99.5050
99.6653
76.7645
12066119142
50.0000
jli-customSNPtvmap_l150_m0_e0homalt
99.5851
99.3976
99.7732
73.0220
13208132033
100.0000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5851
99.1736
100.0000
69.2994
240224100
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5851
99.1736
100.0000
67.8238
240224100
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.5851
99.7230
99.4475
61.4072
360136021
50.0000
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.5851
99.7230
99.4475
61.2420
360136021
50.0000
jlack-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.5851
99.7230
99.4475
62.7955
360136021
50.0000
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.5851
99.5485
99.6217
39.7050
3969183950156
40.0000
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5851
99.1736
100.0000
69.2994
240224100
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5852
99.4085
99.7626
54.0647
25209150252096050
83.3333
ltrigg-rtg2INDELI1_5map_sirenhomalt
99.5854
99.3399
99.8321
73.3974
12048118921
50.0000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5855
99.3980
99.7736
69.6866
264216264464
66.6667
hfeng-pmm1SNP*map_l100_m2_e0*
99.5855
99.3929
99.7787
64.6417
735154497350416349
30.0613
cchapple-customSNP*segdup*
99.5856
99.8219
99.3504
91.8828
28017502798818325
13.6612
astatham-gatkINDELI1_5*het
99.5857
99.4610
99.7107
60.4880
7861542678596228141
61.8421
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5857
99.4940
99.6776
63.2345
216311216472
28.5714
cchapple-customINDELD1_5HG002complexvarhomalt
99.5858
99.5565
99.6150
53.3069
1055147100923936
92.3077
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.5862
100.0000
99.1758
63.0457
361036131
33.3333
ckim-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5862
99.7647
99.4083
59.0715
1780942178081067
6.6038
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.5866
99.8975
99.2777
41.4403
107211110721781
1.2821