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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1543 1544 1545 1546 1547 1548 1549 1550 1551 ... 1720 1721 » 77301-77350 / 86044 show all
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5579	99.8227	99.2945	72.0827	563	1	563	4	4	100.0000
hfeng-pmm1	INDEL	D1_5	*	het	99.5580	99.2715	99.8461	55.4481	86936	638	86940	134	51	38.0597
ckim-dragen	SNP	ti	map_l125_m2_e1	homalt	99.5580	99.2669	99.8508	63.2612	11374	84	11379	17	16	94.1176
egarrison-hhga	SNP	ti	map_siren	het	99.5580	99.2867	99.8308	53.2460	61937	445	61938	105	38	36.1905
dgrover-gatk	SNP	tv	map_l125_m2_e0	homalt	99.5582	99.2521	99.8662	67.1591	5972	45	5972	8	5	62.5000
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.5582	99.2146	99.9041	50.2607	14654	116	14581	14	6	42.8571
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.5583	99.5229	99.5937	62.9090	11055	53	11030	45	18	40.0000
ltrigg-rtg2	SNP	*	map_l150_m0_e0	homalt	99.5584	99.2419	99.8769	71.8698	4058	31	4057	5	4	80.0000
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5585	99.2191	99.9003	37.7315	18041	142	18038	18	6	33.3333
dgrover-gatk	SNP	ti	map_l150_m2_e0	homalt	99.5587	99.2253	99.8942	70.9853	7557	59	7557	8	6	75.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5587	100.0000	99.1213	72.9177	564	0	564	5	5	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5587	100.0000	99.1213	72.7881	564	0	564	5	5	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5587	100.0000	99.1213	72.8401	564	0	564	5	5	100.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5588	99.3397	99.7789	76.7478	1354	9	1354	3	1	33.3333
astatham-gatk	INDEL	*	HG002complexvar	het	99.5588	99.3119	99.8070	57.7885	45894	318	45516	88	55	62.5000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5589	100.0000	99.1217	56.3407	1580	0	1580	14	0	0.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5591	99.1221	100.0000	34.4828	3952	35	3952	0	0
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.5595	100.0000	99.1228	50.4348	343	0	339	3	2	66.6667
mlin-fermikit	INDEL	*	func_cds	homalt	99.5595	100.0000	99.1228	33.5277	226	0	226	2	2	100.0000
ckim-dragen	SNP	ti	map_l125_m1_e0	homalt	99.5597	99.2757	99.8453	60.3228	10965	80	10970	17	16	94.1176
ltrigg-rtg1	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5600	99.5848	99.5352	55.2358	55400	231	55463	259	19	7.3359
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5600	99.2006	99.9221	57.7897	3847	31	3847	3	0	0.0000
jmaeng-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5601	99.6979	99.4226	63.8015	35312	107	35301	205	16	7.8049
hfeng-pmm3	SNP	ti	map_l100_m1_e0	het	99.5602	99.4256	99.6952	64.3351	29770	172	29763	91	9	9.8901
hfeng-pmm3	SNP	ti	segdup	het	99.5602	99.7506	99.3705	89.3230	12000	30	11998	76	0	0.0000
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5603	99.5507	99.5700	75.2360	5096	23	5094	22	10	45.4545
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5604	99.1247	100.0000	67.2096	906	8	906	0	0
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5604	99.1247	100.0000	67.1263	906	8	906	0	0
hfeng-pmm2	INDEL	D1_5	*	het	99.5604	99.3114	99.8107	56.3200	86971	603	86977	165	71	43.0303
asubramanian-gatk	INDEL	I1_5	*	homalt	99.5606	99.5449	99.5763	55.0778	60153	275	60163	256	247	96.4844
ckim-vqsr	INDEL	I1_5	map_l125_m2_e0	homalt	99.5608	99.7067	99.4152	85.0850	340	1	340	2	1	50.0000
dgrover-gatk	INDEL	*	HG002complexvar	*	99.5612	99.4476	99.6751	58.4475	76513	425	76380	249	210	84.3373
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5615	99.2123	99.9132	66.4238	11461	91	11511	10	8	80.0000
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5615	99.2123	99.9132	66.4238	11461	91	11511	10	8	80.0000
dgrover-gatk	SNP	ti	map_l150_m1_e0	homalt	99.5618	99.2357	99.8901	68.6615	7271	56	7271	8	6	75.0000
hfeng-pmm3	SNP	ti	map_l100_m2_e0	het	99.5618	99.4285	99.6954	65.7218	30447	175	30440	93	9	9.6774
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5619	99.3100	99.8151	62.4675	2159	15	2159	4	0	0.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.5620	99.4169	99.7076	57.3034	341	2	341	1	0	0.0000
bgallagher-sentieon	INDEL	I1_5	map_l125_m2_e0	homalt	99.5620	100.0000	99.1279	84.2419	341	0	341	3	2	66.6667
astatham-gatk	INDEL	I1_5	map_l125_m2_e0	homalt	99.5620	100.0000	99.1279	84.4625	341	0	341	3	2	66.6667
bgallagher-sentieon	INDEL	*	*	het	99.5620	99.6441	99.4801	60.4341	193442	691	193072	1009	623	61.7443
hfeng-pmm3	INDEL	I1_5	map_l125_m2_e0	homalt	99.5620	100.0000	99.1279	82.7569	341	0	341	3	2	66.6667
hfeng-pmm2	INDEL	I1_5	map_l125_m2_e0	homalt	99.5620	100.0000	99.1279	83.2766	341	0	341	3	2	66.6667
jli-custom	INDEL	I1_5	map_l125_m2_e0	homalt	99.5620	100.0000	99.1279	83.2522	341	0	341	3	2	66.6667
hfeng-pmm1	INDEL	I1_5	map_l125_m2_e0	homalt	99.5620	100.0000	99.1279	83.6268	341	0	341	3	2	66.6667
dgrover-gatk	SNP	tv	map_l125_m2_e1	homalt	99.5624	99.2591	99.8675	67.1759	6029	45	6029	8	5	62.5000
raldana-dualsentieon	SNP	ti	map_siren	*	99.5625	99.5516	99.5734	52.8084	99905	450	99890	428	23	5.3738
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5625	99.4792	99.6460	61.1149	573	3	563	2	0	0.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5630	99.4272	99.6991	49.6904	3645	21	3645	11	11	100.0000
dgrover-gatk	SNP	ti	map_l150_m2_e1	homalt	99.5631	99.2331	99.8953	71.0135	7634	59	7634	8	6	75.0000

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