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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1541 1542 1543 1544 1545 1546 1547 1548 1549 ... 1720 1721 » 77201-77250 / 86044 show all
bgallagher-sentieon	SNP	ti	map_l150_m0_e0	homalt	99.5462	99.3118	99.7817	72.6486	2742	19	2742	6	5	83.3333
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.5462	99.4562	99.6364	61.3039	1646	9	1644	6	3	50.0000
dgrover-gatk	SNP	tv	map_l125_m1_e0	homalt	99.5463	99.2321	99.8626	64.6877	5815	45	5815	8	5	62.5000
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5463	99.1745	99.9208	47.8198	2523	21	2523	2	0	0.0000
egarrison-hhga	SNP	*	map_l100_m2_e1	*	99.5464	99.2547	99.8398	64.7282	74180	557	74181	119	50	42.0168
ltrigg-rtg1	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5464	99.5815	99.5114	49.8381	27842	117	27901	137	8	5.8394
raldana-dualsentieon	SNP	*	map_l150_m0_e0	homalt	99.5464	99.2908	99.8033	71.7833	4060	29	4060	8	5	62.5000
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.5465	99.6219	99.4711	83.1776	2635	10	2633	14	8	57.1429
ckim-vqsr	INDEL	I1_5	map_siren	homalt	99.5465	99.5050	99.5881	78.6343	1206	6	1209	5	3	60.0000
gduggal-snapvard	SNP	*	func_cds	homalt	99.5466	99.1259	99.9709	21.8523	6918	61	6875	2	2	100.0000
gduggal-bwavard	SNP	*	func_cds	homalt	99.5466	99.0973	100.0000	21.7886	6916	63	6874	0	0
eyeh-varpipe	SNP	tv	map_l150_m0_e0	homalt	99.5466	99.4729	99.6203	81.0066	1321	7	1312	5	1	20.0000
bgallagher-sentieon	SNP	*	map_l150_m0_e0	homalt	99.5466	99.3397	99.7544	73.4273	4062	27	4062	10	8	80.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5466	99.6757	99.4179	77.8922	1537	5	1537	9	5	55.5556
hfeng-pmm2	SNP	tv	segdup	het	99.5467	99.7541	99.3402	91.9297	5274	13	5270	35	0	0.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5467	100.0000	99.0975	80.6361	549	0	549	5	4	80.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5467	99.6973	99.3965	52.0107	4282	13	4282	26	1	3.8462
rpoplin-dv42	SNP	tv	map_siren	*	99.5468	99.4818	99.6119	56.8797	45692	238	45686	178	89	50.0000
rpoplin-dv42	SNP	ti	HG002compoundhet	het	99.5469	99.3898	99.7044	38.8720	9447	58	9445	28	22	78.5714
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5469	99.1667	99.9300	67.8732	1428	12	1428	1	0	0.0000
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5470	99.1558	99.9413	57.3410	17032	145	17028	10	8	80.0000
dgrover-gatk	INDEL	D1_5	segdup	*	99.5471	99.5467	99.5475	94.9619	1098	5	1100	5	2	40.0000
ckim-dragen	SNP	*	func_cds	*	99.5474	99.9669	99.1313	30.5099	18144	6	18144	159	1	0.6289
bgallagher-sentieon	SNP	tv	map_l150_m0_e0	homalt	99.5475	99.3976	99.6979	74.9100	1320	8	1320	4	3	75.0000
bgallagher-sentieon	INDEL	D1_5	segdup	*	99.5476	99.6374	99.4580	94.7935	1099	4	1101	6	2	33.3333
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5478	99.4890	99.6066	49.0683	2531	13	2532	10	2	20.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5480	99.6325	99.4637	71.3697	3524	13	3524	19	19	100.0000
jpowers-varprowl	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.5482	99.9091	99.1899	44.8772	2199	2	2204	18	12	66.6667
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5483	99.3850	99.7121	48.3425	2424	15	2424	7	3	42.8571
jli-custom	SNP	tv	map_l125_m0_e0	homalt	99.5485	99.2796	99.8189	66.7820	2205	16	2205	4	4	100.0000
jmaeng-gatk	INDEL	*	*	homalt	99.5485	99.8690	99.2301	59.0290	125008	164	125021	970	941	97.0103
hfeng-pmm2	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5485	99.7455	99.3523	71.7771	3528	9	3528	23	22	95.6522
hfeng-pmm3	SNP	*	map_l100_m1_e0	het	99.5486	99.4400	99.6575	64.8095	45105	254	45094	155	14	9.0323
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.5487	99.1014	100.0000	35.3153	3419	31	3416	0	0
hfeng-pmm2	SNP	ti	map_l250_m2_e1	homalt	99.5488	99.6050	99.4927	87.8092	1765	7	1765	9	2	22.2222
hfeng-pmm3	SNP	ti	map_l250_m2_e1	homalt	99.5488	99.6050	99.4927	87.7689	1765	7	1765	9	2	22.2222
qzeng-custom	SNP	tv	func_cds	het	99.5488	99.6613	99.4365	40.8444	2648	9	2647	15	0	0.0000
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5489	99.7642	99.3346	49.7344	2538	6	2538	17	0	0.0000
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5490	99.1830	99.9177	59.2008	1214	10	1214	1	1	100.0000
astatham-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5490	99.1830	99.9177	59.0909	1214	10	1214	1	1	100.0000
ckim-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5490	99.1830	99.9177	59.4324	1214	10	1214	1	1	100.0000
hfeng-pmm3	INDEL	I1_5	*	*	99.5494	99.2672	99.8332	56.8186	149560	1104	149606	250	187	74.8000
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.5495	99.7743	99.3258	34.4624	442	1	442	3	3	100.0000
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5496	99.5667	99.5326	76.5043	2987	13	2981	14	4	28.5714
rpoplin-dv42	SNP	ti	map_l125_m2_e1	homalt	99.5496	99.3367	99.7633	68.9111	11382	76	11382	27	26	96.2963
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5497	99.6000	99.4995	76.1480	2988	12	2982	15	4	26.6667
ltrigg-rtg1	INDEL	D1_5	HG002complexvar	homalt	99.5497	99.1413	99.9615	53.6591	10507	91	10381	4	3	75.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5499	99.3263	99.7744	49.3526	1327	9	1327	3	0	0.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5502	99.2026	99.9003	37.1632	18038	145	18035	18	3	16.6667
hfeng-pmm2	SNP	ti	map_siren	het	99.5502	99.5223	99.5781	56.1068	62084	298	62075	263	19	7.2243

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