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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
77151-77200 / 86044 show all
raldana-dualsentieonINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5392
100.0000
99.0826
66.3060
216021622
100.0000
eyeh-varpipeSNPtvmap_l125_m2_e1hetalt
99.5392
100.0000
99.0826
73.6715
30010810
0.0000
hfeng-pmm2SNPtimap_l100_m1_e0*
99.5399
99.5410
99.5389
65.3094
477112204770422130
13.5747
ltrigg-rtg1INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5400
99.2100
99.8721
70.2148
30518243304613932
82.0513
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
99.5405
99.5949
99.4862
63.6798
1106345110375716
28.0702
hfeng-pmm2SNP*map_sirenhet
99.5406
99.5406
99.5405
57.6094
905734189055941833
7.8947
rpoplin-dv42SNP*HG002compoundhethet
99.5408
99.3864
99.6957
45.1283
1409187140874332
74.4186
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5409
99.1719
99.9126
55.4663
25149210251562213
59.0909
jmaeng-gatkSNPtv*het
99.5410
99.5807
99.5013
31.3482
5892152481589142295352
1.7609
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5413
99.0868
100.0000
78.5149
651665100
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5413
99.0868
100.0000
78.2783
651665100
jlack-gatkSNP*HG002compoundhet*
99.5417
99.7018
99.3822
42.1778
25745772573816046
28.7500
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5417
99.5043
99.5791
77.6913
6624336624289
32.1429
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.5418
99.2552
99.8299
54.5384
14660110146752512
48.0000
dgrover-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5418
99.9350
99.1517
74.5652
307412030741263257
97.7186
ckim-vqsrINDELI1_5map_l125_m1_e0homalt
99.5420
99.6942
99.3902
83.8741
326132621
50.0000
jli-customSNPtimap_sirenhet
99.5420
99.4806
99.6035
52.5864
620583246205424750
20.2429
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.5421
99.7007
99.3840
44.2028
1032631103266461
95.3125
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.5421
99.6910
99.3935
43.8031
1032532103256362
98.4127
asubramanian-gatkSNPtvfunc_cds*
99.5422
99.4967
99.5877
36.6971
4349224348180
0.0000
hfeng-pmm2SNPtimap_l100_m2_e1*
99.5423
99.5494
99.5352
66.9275
492622234925523030
13.0435
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5424
99.7679
99.3178
59.4259
386993931271
3.7037
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.5425
99.2565
99.8300
53.1529
293722293750
0.0000
cchapple-customINDELI1_5HG002complexvarhomalt
99.5426
99.4200
99.6654
46.3203
1337078128094342
97.6744
hfeng-pmm3SNPtimap_l250_m2_e0homalt
99.5429
99.5998
99.4860
87.7295
17427174292
22.2222
hfeng-pmm2SNPtimap_l250_m2_e0homalt
99.5429
99.5998
99.4860
87.7706
17427174292
22.2222
egarrison-hhgaSNP*map_l100_m2_e0*
99.5430
99.2483
99.8395
64.7214
734085567340911850
42.3729
cchapple-customSNPtvsegdup*
99.5434
99.8008
99.2874
93.0362
8515178499619
14.7541
ckim-dragenINDEL*HG002complexvarhomalt
99.5434
99.8039
99.2843
57.4048
269745326911194188
96.9072
bgallagher-sentieonINDELI1_5map_l125_m1_e0homalt
99.5434
100.0000
99.0909
82.9104
327032732
66.6667
astatham-gatkINDELI1_5map_l125_m1_e0homalt
99.5434
100.0000
99.0909
83.2146
327032732
66.6667
hfeng-pmm3INDELI1_5map_l125_m1_e0homalt
99.5434
100.0000
99.0909
81.2073
327032732
66.6667
jli-customINDELI1_5map_l125_m1_e0homalt
99.5434
100.0000
99.0909
81.7780
327032732
66.6667
hfeng-pmm2INDELI1_5map_l125_m1_e0homalt
99.5434
100.0000
99.0909
81.8382
327032732
66.6667
hfeng-pmm1INDELI1_5map_l125_m1_e0homalt
99.5434
100.0000
99.0909
82.1429
327032732
66.6667
egarrison-hhgaSNP*map_l100_m1_e0*
99.5435
99.2404
99.8485
62.8269
718535507185410949
44.9541
bgallagher-sentieonINDELD1_5**
99.5437
99.4494
99.6383
60.2111
145937808145993530397
74.9057
ltrigg-rtg2INDELI1_5HG002complexvarhomalt
99.5439
99.1894
99.9010
45.4107
1333810913119138
61.5385
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5440
99.8969
99.1935
59.0506
387443936320
0.0000
ghariani-varprowlSNP*func_cds*
99.5441
99.8512
99.2389
30.8362
18123271812313914
10.0719
jpowers-varprowlSNP*map_sirenhomalt
99.5443
99.4144
99.6746
55.8957
5483332354834179129
72.0670
cchapple-customSNPtiHG002compoundhethomalt
99.5445
99.1480
99.9443
27.6293
733163717344
100.0000
ckim-vqsrSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.5445
99.1568
99.9353
61.6132
10819921081575
71.4286
astatham-gatkSNPtv**
99.5449
99.1184
99.9751
22.0764
961141854996105923961
25.5230
dgrover-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
99.5450
99.5769
99.5131
63.1488
1106147110365417
31.4815
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5453
99.6109
99.4798
78.1348
15366153085
62.5000
rpoplin-dv42SNPtimap_l125_m2_e0homalt
99.5456
99.3309
99.7613
68.8663
1128276112822726
96.2963
ckim-vqsrINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.5458
99.2722
99.8208
49.8653
6684496686127
58.3333
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.5459
99.3019
99.7911
49.8616
6686476688149
64.2857
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5462
99.5186
99.5739
79.3195
1074952107494613
28.2609