PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
77151-77200 / 86044 show all | |||||||||||||||
raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5392 | 100.0000 | 99.0826 | 66.3060 | 216 | 0 | 216 | 2 | 2 | 100.0000 | |
eyeh-varpipe | SNP | tv | map_l125_m2_e1 | hetalt | 99.5392 | 100.0000 | 99.0826 | 73.6715 | 30 | 0 | 108 | 1 | 0 | 0.0000 | |
hfeng-pmm2 | SNP | ti | map_l100_m1_e0 | * | 99.5399 | 99.5410 | 99.5389 | 65.3094 | 47711 | 220 | 47704 | 221 | 30 | 13.5747 | |
ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5400 | 99.2100 | 99.8721 | 70.2148 | 30518 | 243 | 30461 | 39 | 32 | 82.0513 | |
ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.5405 | 99.5949 | 99.4862 | 63.6798 | 11063 | 45 | 11037 | 57 | 16 | 28.0702 | |
hfeng-pmm2 | SNP | * | map_siren | het | 99.5406 | 99.5406 | 99.5405 | 57.6094 | 90573 | 418 | 90559 | 418 | 33 | 7.8947 | |
rpoplin-dv42 | SNP | * | HG002compoundhet | het | 99.5408 | 99.3864 | 99.6957 | 45.1283 | 14091 | 87 | 14087 | 43 | 32 | 74.4186 | |
asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5409 | 99.1719 | 99.9126 | 55.4663 | 25149 | 210 | 25156 | 22 | 13 | 59.0909 | |
jmaeng-gatk | SNP | tv | * | het | 99.5410 | 99.5807 | 99.5013 | 31.3482 | 589215 | 2481 | 589142 | 2953 | 52 | 1.7609 | |
raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5413 | 99.0868 | 100.0000 | 78.5149 | 651 | 6 | 651 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5413 | 99.0868 | 100.0000 | 78.2783 | 651 | 6 | 651 | 0 | 0 | ||
jlack-gatk | SNP | * | HG002compoundhet | * | 99.5417 | 99.7018 | 99.3822 | 42.1778 | 25745 | 77 | 25738 | 160 | 46 | 28.7500 | |
ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5417 | 99.5043 | 99.5791 | 77.6913 | 6624 | 33 | 6624 | 28 | 9 | 32.1429 | |
gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5418 | 99.2552 | 99.8299 | 54.5384 | 14660 | 110 | 14675 | 25 | 12 | 48.0000 | |
dgrover-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5418 | 99.9350 | 99.1517 | 74.5652 | 30741 | 20 | 30741 | 263 | 257 | 97.7186 | |
ckim-vqsr | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5420 | 99.6942 | 99.3902 | 83.8741 | 326 | 1 | 326 | 2 | 1 | 50.0000 | |
jli-custom | SNP | ti | map_siren | het | 99.5420 | 99.4806 | 99.6035 | 52.5864 | 62058 | 324 | 62054 | 247 | 50 | 20.2429 | |
hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5421 | 99.7007 | 99.3840 | 44.2028 | 10326 | 31 | 10326 | 64 | 61 | 95.3125 | |
hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5421 | 99.6910 | 99.3935 | 43.8031 | 10325 | 32 | 10325 | 63 | 62 | 98.4127 | |
asubramanian-gatk | SNP | tv | func_cds | * | 99.5422 | 99.4967 | 99.5877 | 36.6971 | 4349 | 22 | 4348 | 18 | 0 | 0.0000 | |
hfeng-pmm2 | SNP | ti | map_l100_m2_e1 | * | 99.5423 | 99.5494 | 99.5352 | 66.9275 | 49262 | 223 | 49255 | 230 | 30 | 13.0435 | |
ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5424 | 99.7679 | 99.3178 | 59.4259 | 3869 | 9 | 3931 | 27 | 1 | 3.7037 | |
hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.5425 | 99.2565 | 99.8300 | 53.1529 | 2937 | 22 | 2937 | 5 | 0 | 0.0000 | |
cchapple-custom | INDEL | I1_5 | HG002complexvar | homalt | 99.5426 | 99.4200 | 99.6654 | 46.3203 | 13370 | 78 | 12809 | 43 | 42 | 97.6744 | |
hfeng-pmm3 | SNP | ti | map_l250_m2_e0 | homalt | 99.5429 | 99.5998 | 99.4860 | 87.7295 | 1742 | 7 | 1742 | 9 | 2 | 22.2222 | |
hfeng-pmm2 | SNP | ti | map_l250_m2_e0 | homalt | 99.5429 | 99.5998 | 99.4860 | 87.7706 | 1742 | 7 | 1742 | 9 | 2 | 22.2222 | |
egarrison-hhga | SNP | * | map_l100_m2_e0 | * | 99.5430 | 99.2483 | 99.8395 | 64.7214 | 73408 | 556 | 73409 | 118 | 50 | 42.3729 | |
cchapple-custom | SNP | tv | segdup | * | 99.5434 | 99.8008 | 99.2874 | 93.0362 | 8515 | 17 | 8499 | 61 | 9 | 14.7541 | |
ckim-dragen | INDEL | * | HG002complexvar | homalt | 99.5434 | 99.8039 | 99.2843 | 57.4048 | 26974 | 53 | 26911 | 194 | 188 | 96.9072 | |
bgallagher-sentieon | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 82.9104 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
astatham-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 83.2146 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
hfeng-pmm3 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 81.2073 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
jli-custom | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 81.7780 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
hfeng-pmm2 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 81.8382 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 82.1429 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
egarrison-hhga | SNP | * | map_l100_m1_e0 | * | 99.5435 | 99.2404 | 99.8485 | 62.8269 | 71853 | 550 | 71854 | 109 | 49 | 44.9541 | |
bgallagher-sentieon | INDEL | D1_5 | * | * | 99.5437 | 99.4494 | 99.6383 | 60.2111 | 145937 | 808 | 145993 | 530 | 397 | 74.9057 | |
ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | homalt | 99.5439 | 99.1894 | 99.9010 | 45.4107 | 13338 | 109 | 13119 | 13 | 8 | 61.5385 | |
ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5440 | 99.8969 | 99.1935 | 59.0506 | 3874 | 4 | 3936 | 32 | 0 | 0.0000 | |
ghariani-varprowl | SNP | * | func_cds | * | 99.5441 | 99.8512 | 99.2389 | 30.8362 | 18123 | 27 | 18123 | 139 | 14 | 10.0719 | |
jpowers-varprowl | SNP | * | map_siren | homalt | 99.5443 | 99.4144 | 99.6746 | 55.8957 | 54833 | 323 | 54834 | 179 | 129 | 72.0670 | |
cchapple-custom | SNP | ti | HG002compoundhet | homalt | 99.5445 | 99.1480 | 99.9443 | 27.6293 | 7331 | 63 | 7173 | 4 | 4 | 100.0000 | |
ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5445 | 99.1568 | 99.9353 | 61.6132 | 10819 | 92 | 10815 | 7 | 5 | 71.4286 | |
astatham-gatk | SNP | tv | * | * | 99.5449 | 99.1184 | 99.9751 | 22.0764 | 961141 | 8549 | 961059 | 239 | 61 | 25.5230 | |
dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.5450 | 99.5769 | 99.5131 | 63.1488 | 11061 | 47 | 11036 | 54 | 17 | 31.4815 | |
ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5453 | 99.6109 | 99.4798 | 78.1348 | 1536 | 6 | 1530 | 8 | 5 | 62.5000 | |
rpoplin-dv42 | SNP | ti | map_l125_m2_e0 | homalt | 99.5456 | 99.3309 | 99.7613 | 68.8663 | 11282 | 76 | 11282 | 27 | 26 | 96.2963 | |
ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5458 | 99.2722 | 99.8208 | 49.8653 | 6684 | 49 | 6686 | 12 | 7 | 58.3333 | |
jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5459 | 99.3019 | 99.7911 | 49.8616 | 6686 | 47 | 6688 | 14 | 9 | 64.2857 | |
bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5462 | 99.5186 | 99.5739 | 79.3195 | 10749 | 52 | 10749 | 46 | 13 | 28.2609 |