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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1537 1538 1539 1540 1541 1542 1543 1544 1545 ... 1720 1721 » 77001-77050 / 86044 show all
jlack-gatk	INDEL	I1_5	HG002complexvar	*	99.5214	99.3556	99.6877	57.0609	33148	215	33197	104	72	69.2308
ndellapenna-hhga	SNP	*	map_l150_m0_e0	homalt	99.5215	99.1930	99.8523	72.7346	4056	33	4056	6	5	83.3333
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5215	99.1930	99.8523	76.2248	1352	11	1352	2	2	100.0000
ltrigg-rtg2	INDEL	I1_5	*	*	99.5218	99.3203	99.7241	55.5467	149639	1024	148928	412	159	38.5922
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5220	99.3296	99.7152	58.2062	3852	26	3852	11	4	36.3636
raldana-dualsentieon	INDEL	D1_5	*	het	99.5220	99.2680	99.7773	56.3227	86933	641	86937	194	136	70.1031
jli-custom	SNP	*	map_siren	het	99.5222	99.4681	99.5764	53.8949	90507	484	90501	385	76	19.7403
ckim-gatk	SNP	*	func_cds	het	99.5225	99.9283	99.1199	36.5539	11153	8	11150	99	1	1.0101
hfeng-pmm3	SNP	tv	map_l125_m2_e1	*	99.5225	99.4777	99.5673	71.4702	16570	87	16568	72	10	13.8889
hfeng-pmm2	SNP	ti	segdup	het	99.5229	99.7257	99.3210	90.4269	11997	33	11995	82	0	0.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5230	99.3610	99.6855	53.7118	311	2	317	1	1	100.0000
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5233	99.0511	100.0000	35.2554	6681	64	6681	0	0
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.5235	99.4286	99.6187	61.7293	1044	6	1045	4	4	100.0000
ckim-vqsr	SNP	ti	*	het	99.5238	99.1280	99.9229	24.8520	1270713	11178	1270665	981	62	6.3201
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5238	99.0521	100.0000	59.3712	1672	16	1680	0	0
gduggal-bwafb	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.5239	99.8551	99.1949	41.9366	3445	5	3450	28	3	10.7143
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5243	99.3038	99.7457	47.7582	1569	11	1569	4	0	0.0000
gduggal-snapplat	SNP	ti	func_cds	*	99.5243	99.4052	99.6437	28.8978	13705	82	13705	49	5	10.2041
hfeng-pmm2	SNP	*	map_l100_m2_e1	*	99.5245	99.5678	99.4812	67.6245	74414	323	74403	388	47	12.1134
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5246	99.3671	99.6825	48.0883	1570	10	1570	5	2	40.0000
dgrover-gatk	SNP	ti	map_l100_m2_e0	*	99.5249	99.4730	99.5767	67.5957	48703	258	48696	207	50	24.1546
rpoplin-dv42	INDEL	D1_5	HG002complexvar	het	99.5249	99.3402	99.7103	55.5097	20628	137	20652	60	48	80.0000
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.5254	99.5254	99.5254	68.0722	9646	46	9646	46	24	52.1739
ndellapenna-hhga	SNP	tv	map_l125_m0_e0	homalt	99.5256	99.1896	99.8640	68.2316	2203	18	2203	3	2	66.6667
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.5258	99.2722	99.7807	70.9677	1364	10	1365	3	1	33.3333
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5260	99.0651	99.9913	63.9562	11444	108	11444	1	1	100.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5260	99.0651	99.9913	63.9562	11444	108	11444	1	1	100.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.5261	99.5261	99.5261	46.9849	210	1	210	1	0	0.0000
hfeng-pmm3	SNP	tv	map_l100_m1_e0	het	99.5262	99.4681	99.5843	65.6944	15335	82	15331	64	5	7.8125
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5262	99.3991	99.6536	77.7226	6617	40	6617	23	9	39.1304
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.5262	99.6838	99.3691	86.9359	1261	4	1260	8	6	75.0000
rpoplin-dv42	SNP	*	map_siren	het	99.5263	99.4010	99.6518	54.9841	90446	545	90433	316	159	50.3165
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.5267	99.5633	99.4902	73.5096	1368	6	1366	7	0	0.0000
ckim-dragen	INDEL	D1_5	HG002complexvar	*	99.5269	99.3917	99.6625	58.3864	32516	199	32478	110	86	78.1818
dgrover-gatk	SNP	tv	map_siren	het	99.5269	99.6400	99.4140	62.9092	28506	103	28501	168	26	15.4762
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5273	99.6634	99.3915	39.2247	4737	16	4737	29	28	96.5517
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5274	99.0593	100.0000	79.9199	1053	10	1053	0	0
ckim-isaac	SNP	ti	func_cds	het	99.5275	99.0828	99.9763	20.1440	8426	78	8426	2	0	0.0000
ltrigg-rtg2	SNP	ti	map_l150_m0_e0	homalt	99.5276	99.2032	99.8541	71.1520	2739	22	2738	4	4	100.0000
dgrover-gatk	SNP	ti	map_l100_m2_e1	*	99.5279	99.4766	99.5792	67.5880	49226	259	49219	208	50	24.0385
dgrover-gatk	SNP	tv	segdup	het	99.5280	99.7730	99.2842	92.5335	5275	12	5271	38	0	0.0000
ltrigg-rtg1	SNP	ti	map_l150_m0_e0	homalt	99.5282	99.3481	99.7091	74.5205	2743	18	2742	8	8	100.0000
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5283	99.0610	100.0000	84.2066	844	8	844	0	0
ndellapenna-hhga	SNP	*	map_siren	*	99.5283	99.1937	99.8651	53.0102	145049	1179	145051	196	89	45.4082
rpoplin-dv42	SNP	tv	HG002compoundhet	het	99.5284	99.3794	99.6779	54.5836	4644	29	4642	15	10	66.6667
jpowers-varprowl	SNP	ti	func_cds	*	99.5285	99.5285	99.5285	26.5751	13722	65	13722	65	9	13.8462
raldana-dualsentieon	INDEL	*	*	homalt	99.5287	99.8738	99.1860	57.6626	125014	158	125023	1026	1009	98.3431
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5288	99.4462	99.6115	59.5139	19752	110	19745	77	49	63.6364
astatham-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5289	99.9220	99.1388	74.4236	30737	24	30737	267	261	97.7528
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5289	99.1784	99.8818	84.7237	845	7	845	1	0	0.0000

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