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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1536 1537 1538 1539 1540 1541 1542 1543 1544 ... 1720 1721 » 76951-77000 / 86044 show all
ckim-gatk	INDEL	D1_5	HG002complexvar	*	99.5163	99.3153	99.7181	58.5688	32491	224	32545	92	72	78.2609
ckim-gatk	SNP	tv	HG002complexvar	*	99.5164	99.0689	99.9680	22.5419	243860	2292	243768	78	28	35.8974
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.5167	99.4332	99.6003	68.5145	4737	27	4735	19	7	36.8421
astatham-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5168	99.0808	99.9567	54.7993	27702	257	27701	12	5	41.6667
eyeh-varpipe	INDEL	C1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.5169	100.0000	99.0385	92.1212	1	0	206	2	0	0.0000
gduggal-bwafb	SNP	ti	HG002complexvar	hetalt	99.5169	99.5169	99.5169	46.5116	206	1	206	1	1	100.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5170	99.7054	99.3293	39.8437	4739	14	4739	32	32	100.0000
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5173	99.5860	99.4487	75.8037	3608	15	3608	20	9	45.0000
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5174	99.9237	99.1144	60.1090	3928	3	3917	35	2	5.7143
hfeng-pmm3	SNP	tv	map_l125_m2_e0	*	99.5176	99.4724	99.5629	71.4177	16402	87	16400	72	10	13.8889
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5178	99.1170	99.9219	62.2385	11450	102	11509	9	8	88.8889
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5178	99.1170	99.9219	62.2385	11450	102	11509	9	8	88.8889
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.5180	99.5769	99.4593	62.5780	11061	47	11036	60	22	36.6667
jpowers-varprowl	SNP	ti	HG002complexvar	*	99.5182	99.3169	99.7203	18.7923	504961	3473	505119	1417	799	56.3867
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5185	99.0415	100.0000	31.8681	310	3	310	0	0
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5185	99.0415	100.0000	36.0825	310	3	310	0	0
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5185	99.0415	100.0000	33.4764	310	3	310	0	0
egarrison-hhga	SNP	ti	map_l250_m2_e1	homalt	99.5188	99.2099	99.8296	87.5758	1758	14	1758	3	3	100.0000
ckim-vqsr	INDEL	I1_5	map_l100_m1_e0	homalt	99.5188	99.8069	99.2322	81.1709	517	1	517	4	3	75.0000
qzeng-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5189	99.8302	99.2095	64.3231	1764	3	1757	14	7	50.0000
rpoplin-dv42	INDEL	*	*	homalt	99.5190	99.2498	99.7896	55.3247	124233	939	124240	262	239	91.2214
ckim-dragen	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5191	99.4821	99.5562	75.3624	48021	250	47785	213	116	54.4601
jli-custom	INDEL	D1_5	HG002complexvar	*	99.5191	99.2725	99.7668	57.5505	32477	238	32518	76	59	77.6316
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.5192	99.0431	100.0000	47.9245	414	4	414	0	0
cchapple-custom	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.5192	99.0431	100.0000	49.7048	414	4	426	0	0
ckim-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.5192	99.0431	100.0000	47.9899	414	4	414	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.5192	99.0431	100.0000	47.9899	414	4	414	0	0
qzeng-custom	SNP	ti	*	*	99.5194	99.2515	99.7887	20.8361	2069907	15611	2063126	4368	997	22.8251
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5195	99.4061	99.6332	48.7604	10042	60	10049	37	25	67.5676
hfeng-pmm2	SNP	*	map_l100_m1_e0	*	99.5195	99.5580	99.4810	66.0017	72083	320	72072	376	47	12.5000
gduggal-snapfb	SNP	tv	*	homalt	99.5195	99.7842	99.2562	25.9790	376309	814	376328	2820	182	6.4539
hfeng-pmm2	SNP	tv	map_siren	het	99.5196	99.5806	99.4588	60.5491	28489	120	28484	155	14	9.0323
hfeng-pmm2	INDEL	I1_5	map_l100_m1_e0	homalt	99.5197	100.0000	99.0440	79.1965	518	0	518	5	4	80.0000
hfeng-pmm3	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5197	99.6701	99.3697	56.7552	3626	12	3626	23	21	91.3043
hfeng-pmm3	INDEL	I1_5	map_l100_m1_e0	homalt	99.5197	100.0000	99.0440	78.7398	518	0	518	5	3	60.0000
bgallagher-sentieon	INDEL	I1_5	map_l100_m1_e0	homalt	99.5197	100.0000	99.0440	80.3679	518	0	518	5	4	80.0000
astatham-gatk	INDEL	I1_5	map_l100_m1_e0	homalt	99.5197	100.0000	99.0440	80.6440	518	0	518	5	4	80.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5198	99.6042	99.4355	71.4918	3523	14	3523	20	20	100.0000
gduggal-bwavard	SNP	ti	*	homalt	99.5201	99.0724	99.9718	15.7269	795590	7449	791466	223	186	83.4081
bgallagher-sentieon	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.5204	99.2823	99.7596	46.4607	415	3	415	1	1	100.0000
ckim-vqsr	INDEL	*	*	het	99.5204	99.5086	99.5323	62.3713	193179	954	192796	906	561	61.9205
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.5204	99.2464	99.7960	35.7063	3424	26	3425	7	4	57.1429
hfeng-pmm1	SNP	ti	map_l250_m2_e1	homalt	99.5205	99.5485	99.4924	87.8161	1764	8	1764	9	2	22.2222
dgrover-gatk	SNP	*	map_l150_m2_e1	homalt	99.5206	99.1629	99.8808	71.2164	11728	99	11728	14	10	71.4286
ckim-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5208	99.9187	99.1260	74.4622	30736	25	30736	271	264	97.4170
hfeng-pmm2	SNP	*	map_l100_m2_e0	*	99.5209	99.5633	99.4785	67.6209	73641	323	73630	386	47	12.1762
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5211	99.2589	99.7847	51.9691	6027	45	6024	13	8	61.5385
ltrigg-rtg2	INDEL	D1_5	HG002complexvar	homalt	99.5212	99.0753	99.9711	52.6911	10500	98	10378	3	2	66.6667
ltrigg-rtg2	SNP	tv	func_cds	*	99.5213	99.8856	99.1597	26.7631	4366	5	4366	37	0	0.0000
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5214	99.5507	99.4922	74.9449	5096	23	5094	26	13	50.0000

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