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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1535 1536 1537 1538 1539 1540 1541 1542 1543 ... 1720 1721 » 76901-76950 / 86044 show all
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5111	99.0269	100.0000	52.7669	1323	13	1323	0	0
cchapple-custom	INDEL	D1_5	*	het	99.5112	99.3229	99.7003	54.7900	86981	593	97146	292	149	51.0274
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.5113	99.0527	99.9742	29.4879	3869	37	3868	1	1	100.0000
ckim-vqsr	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5116	99.0847	99.9423	61.0562	1732	16	1732	1	1	100.0000
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5118	99.1766	99.8493	51.4275	1325	11	1325	2	0	0.0000
hfeng-pmm2	SNP	tv	map_l150_m0_e0	homalt	99.5118	99.7741	99.2509	78.3981	1325	3	1325	10	3	30.0000
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.5118	99.8232	99.2024	37.2444	7342	13	7338	59	5	8.4746
hfeng-pmm1	SNP	tv	map_l150_m0_e0	homalt	99.5118	99.7741	99.2509	78.2644	1325	3	1325	10	3	30.0000
jli-custom	INDEL	*	*	het	99.5119	99.3015	99.7232	58.0133	192777	1356	192389	534	340	63.6704
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5122	99.2515	99.7743	48.6278	1326	10	1326	3	0	0.0000
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.5123	99.4950	99.5296	71.9110	28567	145	28561	135	47	34.8148
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.5123	99.4950	99.5296	71.9110	28567	145	28561	135	47	34.8148
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.5123	99.0294	100.0000	77.4811	3877	38	3896	0	0
ckim-vqsr	INDEL	D1_5	*	*	99.5124	99.3485	99.6767	61.5493	145789	956	145843	473	318	67.2304
egarrison-hhga	SNP	ti	map_l250_m2_e0	homalt	99.5125	99.1995	99.8274	87.5412	1735	14	1735	3	3	100.0000
ckim-vqsr	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5126	99.8992	99.1290	74.4665	30730	31	30730	270	263	97.4074
astatham-gatk	INDEL	*	*	het	99.5127	99.4973	99.5281	60.7701	193157	976	192779	914	573	62.6915
gduggal-bwavard	SNP	*	*	homalt	99.5128	99.0597	99.9700	16.7717	1169065	11097	1159771	348	269	77.2989
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5131	99.4163	99.6101	78.2596	1533	9	1533	6	5	83.3333
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5131	99.3427	99.6841	80.0486	10730	71	10730	34	12	35.2941
ltrigg-rtg2	SNP	*	func_cds	het	99.5132	99.8298	99.1986	22.7101	11142	19	11141	90	1	1.1111
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5135	99.4812	99.5457	78.2406	1534	8	1534	7	5	71.4286
hfeng-pmm3	INDEL	D1_5	*	*	99.5137	99.1441	99.8861	56.7122	145489	1256	145542	166	109	65.6627
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.5138	99.1122	99.9186	36.8380	2456	22	2455	2	1	50.0000
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5138	99.8915	99.1389	78.0222	921	1	921	8	3	37.5000
raldana-dualsentieon	SNP	*	HG002complexvar	hetalt	99.5138	99.0323	100.0000	35.3684	307	3	307	0	0
raldana-dualsentieon	SNP	tv	HG002complexvar	hetalt	99.5138	99.0323	100.0000	35.3684	307	3	307	0	0
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5140	99.3932	99.6350	71.2386	819	5	819	3	1	33.3333
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5140	99.3932	99.6350	71.6258	819	5	819	3	1	33.3333
hfeng-pmm1	SNP	ti	map_l250_m2_e0	homalt	99.5141	99.5426	99.4857	87.7793	1741	8	1741	9	2	22.2222
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5144	99.6757	99.3536	78.0162	1537	5	1537	10	5	50.0000
astatham-gatk	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	35.3312	205	2	205	0	0
bgallagher-sentieon	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	35.3312	205	2	205	0	0
raldana-dualsentieon	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	34.5048	205	2	205	0	0
jli-custom	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	36.3354	205	2	205	0	0
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5146	99.6528	99.3767	68.2498	1435	5	1435	9	0	0.0000
hfeng-pmm1	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	38.6228	205	2	205	0	0
hfeng-pmm2	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	39.5280	205	2	205	0	0
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5146	99.0842	99.9487	54.1691	3895	36	3895	2	0	0.0000
hfeng-pmm3	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	37.3089	205	2	205	0	0
dgrover-gatk	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	35.9375	205	2	205	0	0
hfeng-pmm1	INDEL	I1_5	*	*	99.5147	99.2699	99.7606	57.3300	149564	1100	149609	359	252	70.1950
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.5149	99.7222	99.3084	87.5709	718	2	718	5	4	80.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5149	99.3263	99.7043	51.4820	11795	80	11800	35	21	60.0000
hfeng-pmm3	SNP	ti	map_l100_m0_e0	*	99.5150	99.4304	99.5997	67.5390	21647	124	21644	87	13	14.9425
cchapple-custom	SNP	*	HG002compoundhet	homalt	99.5150	99.0818	99.9520	31.0764	10683	99	10419	5	5	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5152	99.4428	99.5877	78.3498	6068	34	6039	25	11	44.0000
dgrover-gatk	SNP	*	map_l150_m2_e0	homalt	99.5153	99.1538	99.8795	71.2083	11600	99	11600	14	10	71.4286
ltrigg-rtg1	INDEL	D1_5	map_l100_m2_e1	homalt	99.5161	99.3548	99.6779	80.8747	616	4	619	2	2	100.0000
astatham-gatk	INDEL	D1_5	map_l100_m2_e1	homalt	99.5161	99.5161	99.5161	83.8500	617	3	617	3	2	66.6667

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