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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1533 1534 1535 1536 1537 1538 1539 1540 1541 ... 1720 1721 » 76801-76850 / 86044 show all
egarrison-hhga	SNP	*	map_l250_m2_e0	homalt	99.4958	99.1809	99.8127	87.5461	2664	22	2664	5	5	100.0000
egarrison-hhga	SNP	tv	map_l100_m1_e0	*	99.4963	99.1715	99.8233	63.2033	24298	203	24298	43	19	44.1860
dgrover-gatk	SNP	*	map_l100_m2_e0	*	99.4963	99.4795	99.5130	68.3628	73579	385	73568	360	79	21.9444
gduggal-bwavard	SNP	tv	*	homalt	99.4965	99.0327	99.9647	19.0358	373475	3648	371220	131	86	65.6489
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.4965	99.7175	99.2765	38.0786	2471	7	2470	18	1	5.5556
qzeng-custom	SNP	*	*	*	99.4966	99.2413	99.7533	22.5407	3031458	23176	3012983	7452	1530	20.5314
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4966	99.3171	99.6769	61.8156	28067	193	28070	91	68	74.7253
ckim-dragen	SNP	ti	map_l100_m0_e0	homalt	99.4968	99.1896	99.8059	56.2121	7711	63	7714	15	14	93.3333
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.4970	99.5995	99.3948	81.7770	1492	6	1478	9	8	88.8889
gduggal-snapplat	SNP	ti	*	homalt	99.4971	99.0644	99.9337	17.3977	795526	7513	795327	528	217	41.0985
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4971	99.8738	99.1234	45.0258	4747	6	4749	42	40	95.2381
jli-custom	SNP	ti	map_l100_m1_e0	*	99.4974	99.3240	99.6713	60.4603	47607	324	47605	157	50	31.8471
jli-custom	SNP	ti	map_l100_m2_e0	*	99.4978	99.3362	99.6598	62.5143	48636	325	48634	166	50	30.1205
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4978	99.2429	99.7541	54.5635	25167	192	25148	62	34	54.8387
hfeng-pmm1	INDEL	I1_5	HG002complexvar	het	99.4978	99.1313	99.8669	57.6162	18031	158	18012	24	10	41.6667
cchapple-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4978	99.5967	99.3992	57.0007	17779	72	17867	108	27	25.0000
hfeng-pmm2	SNP	*	map_l250_m2_e0	homalt	99.4980	99.6277	99.3687	87.8966	2676	10	2676	17	6	35.2941
egarrison-hhga	SNP	tv	map_l100_m2_e1	*	99.4981	99.1892	99.8090	65.1604	25078	205	25078	48	19	39.5833
gduggal-bwaplat	SNP	ti	func_cds	*	99.4984	99.2747	99.7231	31.1374	13687	100	13687	38	4	10.5263
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4987	99.1235	99.8768	54.4784	16285	144	16208	20	7	35.0000
rpoplin-dv42	SNP	*	map_l125_m1_e0	homalt	99.4988	99.2251	99.7740	66.6415	16774	131	16774	38	37	97.3684
gduggal-bwafb	SNP	*	map_l125_m2_e1	homalt	99.4990	99.1216	99.8793	70.3837	17378	154	17378	21	13	61.9048
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4994	99.8555	99.1459	64.4153	27638	40	27628	238	20	8.4034
dgrover-gatk	SNP	*	map_l100_m2_e1	*	99.4995	99.4835	99.5154	68.3658	74351	386	74340	362	79	21.8232
ndellapenna-hhga	SNP	tv	map_siren	*	99.4997	99.1596	99.8422	55.1910	45544	386	45544	72	30	41.6667
hfeng-pmm2	INDEL	I1_5	*	*	99.4998	99.2726	99.7280	57.5644	149568	1096	149613	408	306	75.0000
rpoplin-dv42	INDEL	D1_5	segdup	*	99.4999	99.1840	99.8179	94.3988	1094	9	1096	2	2	100.0000
dgrover-gatk	SNP	*	map_l100_m1_e0	*	99.4999	99.4779	99.5218	66.8041	72025	378	72014	346	78	22.5434
jpowers-varprowl	SNP	*	*	*	99.5004	99.5447	99.4561	23.3348	3040706	13908	3041157	16632	2670	16.0534
gduggal-bwafb	SNP	ti	map_l125_m2_e0	homalt	99.5006	99.1196	99.8847	69.9640	11258	100	11258	13	7	53.8462
egarrison-hhga	SNP	ti	map_l250_m1_e0	homalt	99.5006	99.1910	99.8121	86.3830	1594	13	1594	3	3	100.0000
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5010	99.4006	99.6016	52.3483	25207	152	26749	107	95	88.7850
hfeng-pmm2	INDEL	D1_5	segdup	*	99.5010	99.3654	99.6370	94.5866	1096	7	1098	4	0	0.0000
jli-custom	SNP	ti	map_l100_m2_e1	*	99.5011	99.3412	99.6614	62.5257	49159	326	49157	167	50	29.9401
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5015	99.5702	99.4329	75.1639	5097	22	5085	29	11	37.9310
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.5016	99.4565	99.5467	86.5782	1098	6	1098	5	4	80.0000
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5016	99.3035	99.7006	63.3236	998	7	999	3	2	66.6667
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.5016	99.4565	99.5467	86.5782	1098	6	1098	5	4	80.0000
egarrison-hhga	SNP	*	map_l250_m2_e1	homalt	99.5018	99.1906	99.8149	87.6004	2696	22	2696	5	5	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.5020	99.5471	99.4570	86.4067	1099	5	1099	6	5	83.3333
mlin-fermikit	SNP	ti	func_cds	*	99.5022	99.3109	99.6942	17.8687	13692	95	13692	42	34	80.9524
hfeng-pmm3	SNP	ti	map_l150_m2_e0	*	99.5024	99.4394	99.5655	75.5202	20397	115	20393	89	14	15.7303
hfeng-pmm3	SNP	ti	map_l250_m1_e0	homalt	99.5025	99.5644	99.4406	86.8266	1600	7	1600	9	2	22.2222
hfeng-pmm2	SNP	ti	map_l250_m1_e0	homalt	99.5025	99.5644	99.4406	86.8749	1600	7	1600	9	2	22.2222
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5025	99.0393	99.9700	61.7944	10000	97	10000	3	3	100.0000
hfeng-pmm3	SNP	ti	map_l150_m2_e1	*	99.5026	99.4402	99.5651	75.5918	20607	116	20603	90	14	15.5556
ghariani-varprowl	SNP	*	map_siren	homalt	99.5027	99.3944	99.6112	54.3239	54822	334	54823	214	127	59.3458
bgallagher-sentieon	SNP	*	segdup	*	99.5028	99.8432	99.1647	90.1877	28023	44	28017	236	12	5.0848
hfeng-pmm3	SNP	tv	map_l125_m1_e0	*	99.5034	99.4568	99.5500	69.7161	15929	87	15927	72	10	13.8889
jmaeng-gatk	SNP	tv	HG002complexvar	*	99.5035	99.0473	99.9639	22.5835	243807	2345	243715	88	31	35.2273

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