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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1529 1530 1531 1532 1533 1534 1535 1536 1537 ... 1720 1721 » 76601-76650 / 86044 show all
hfeng-pmm1	SNP	*	map_l125_m2_e1	*	99.4713	99.2564	99.6872	70.6981	46851	351	46845	147	41	27.8912
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.4713	99.5745	99.3684	67.9054	468	2	472	3	3	100.0000
ltrigg-rtg2	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4714	99.5136	99.4293	48.5634	27823	136	27875	160	12	7.5000
hfeng-pmm1	SNP	tv	map_l125_m1_e0	*	99.4714	99.2945	99.6491	69.3117	15903	113	15901	56	16	28.5714
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4714	99.0316	99.9151	48.2190	11760	115	11765	10	7	70.0000
gduggal-snapplat	SNP	ti	segdup	homalt	99.4715	99.0673	99.8790	87.9842	7435	70	7429	9	6	66.6667
cchapple-custom	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4715	99.6836	99.2603	56.9862	55455	176	55556	414	57	13.7681
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4715	98.9485	100.0000	36.3424	2729	29	2729	0	0
bgallagher-sentieon	SNP	ti	map_l100_m1_e0	*	99.4715	99.5452	99.3979	64.6493	47713	218	47706	289	50	17.3010
jli-custom	SNP	*	map_l100_m1_e0	*	99.4716	99.3149	99.6287	61.0483	71907	496	71904	268	79	29.4776
astatham-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4718	99.0131	99.9347	60.3688	55082	549	55072	36	19	52.7778
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4720	99.4510	99.4930	87.3253	2355	13	2355	12	11	91.6667
raldana-dualsentieon	INDEL	I1_5	segdup	homalt	99.4720	99.5772	99.3671	92.4798	471	2	471	3	3	100.0000
jmaeng-gatk	INDEL	I1_5	segdup	homalt	99.4720	99.5772	99.3671	92.8539	471	2	471	3	3	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.4721	99.6475	99.2974	88.2757	848	3	848	6	5	83.3333
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.4721	99.4737	99.4705	36.2584	1323	7	1315	7	7	100.0000
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.4723	99.6037	99.3412	88.4492	1508	6	1508	10	9	90.0000
jpowers-varprowl	SNP	tv	HG002complexvar	homalt	99.4724	99.9411	99.0081	25.6082	95055	56	95130	953	743	77.9643
jli-custom	SNP	*	map_l100_m2_e0	*	99.4726	99.3267	99.6190	63.1033	73466	498	73463	281	79	28.1139
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.4728	99.0810	99.8678	43.7004	2264	21	2267	3	0	0.0000
ndellapenna-hhga	SNP	tv	segdup	*	99.4730	99.5546	99.3915	90.2986	8494	38	8494	52	18	34.6154
hfeng-pmm2	SNP	*	map_l250_m1_e0	homalt	99.4730	99.6346	99.3120	87.0152	2454	9	2454	17	6	35.2941
ckim-dragen	INDEL	I1_5	segdup	homalt	99.4731	99.7886	99.1597	92.5718	472	1	472	4	4	100.0000
egarrison-hhga	INDEL	I1_5	segdup	homalt	99.4731	99.7886	99.1597	92.9261	472	1	472	4	4	100.0000
hfeng-pmm3	INDEL	*	map_siren	homalt	99.4733	99.4727	99.4739	78.7290	2641	14	2647	14	9	64.2857
jmaeng-gatk	SNP	tv	segdup	homalt	99.4735	99.1970	99.7516	89.7966	3212	26	3212	8	8	100.0000
ckim-vqsr	SNP	*	*	het	99.4736	99.0611	99.8894	26.9578	1855996	17591	1855876	2054	101	4.9172
astatham-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4739	99.3445	99.6037	78.1364	6062	40	6032	24	14	58.3333
raldana-dualsentieon	SNP	tv	map_l250_m1_e0	homalt	99.4740	99.4159	99.5322	84.0366	851	5	851	4	2	50.0000
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4741	99.3855	99.5628	54.8644	6146	38	6148	27	9	33.3333
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4741	99.1018	99.8492	51.2858	1324	12	1324	2	0	0.0000
hfeng-pmm3	SNP	tv	map_l150_m0_e0	homalt	99.4741	99.6988	99.2504	78.1634	1324	4	1324	10	3	30.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4742	98.9540	100.0000	75.3389	473	5	473	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4742	98.9540	100.0000	69.2510	473	5	468	0	0
bgallagher-sentieon	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4743	99.4428	99.5058	77.9305	6068	34	6040	30	14	46.6667
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4745	99.8312	99.1202	49.1587	2366	4	2366	21	20	95.2381
jlack-gatk	SNP	ti	HG002compoundhet	het	99.4749	99.6739	99.2768	41.5881	9474	31	9472	69	16	23.1884
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4749	99.2317	99.7192	49.7413	4262	33	4262	12	1	8.3333
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4749	99.2515	99.6992	51.2106	1326	10	1326	4	0	0.0000
ckim-gatk	INDEL	D1_5	*	*	99.4755	99.4262	99.5247	61.4945	145903	842	145958	697	326	46.7719
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4755	99.3161	99.6354	69.3829	11473	79	11478	42	36	85.7143
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4755	99.3161	99.6354	69.3829	11473	79	11478	42	36	85.7143
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.4756	99.2381	99.7143	61.1399	1042	8	1047	3	3	100.0000
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4756	99.0317	99.9234	63.0172	27410	268	27401	21	8	38.0952
hfeng-pmm2	INDEL	I1_5	HG002complexvar	het	99.4756	99.0819	99.8724	57.6818	18022	167	18002	23	11	47.8261
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4758	99.1531	99.8007	37.5709	18029	154	18026	36	2	5.5556
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.4759	99.0435	99.9122	35.7223	3417	33	3414	3	0	0.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.4759	99.0435	99.9122	35.0997	3417	33	3414	3	0	0.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4759	99.4255	99.5264	47.7277	2942	17	2942	14	0	0.0000
jli-custom	SNP	tv	HG002compoundhet	het	99.4759	99.5292	99.4226	55.0428	4651	22	4649	27	10	37.0370

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