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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76551-76600 / 86044 show all
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4652
99.1471
99.7854
85.5145
465446511
100.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4652
99.0868
99.8466
80.5547
651665110
0.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4652
99.1471
99.7854
85.6439
465446510
0.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4652
99.1471
99.7854
85.4602
465446511
100.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4652
99.1471
99.7854
85.4602
465446511
100.0000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4652
99.1471
99.7854
85.1071
465446511
100.0000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4656
99.3180
99.6136
37.1650
66994667032625
96.1538
ckim-dragenINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4656
99.3773
99.5540
78.3693
6064386027277
25.9259
raldana-dualsentieonSNPtvmap_l250_m2_e0homalt
99.4658
99.3597
99.5722
85.2640
931693142
50.0000
rpoplin-dv42SNPtimap_l100_m2_e0*
99.4660
99.2933
99.6392
64.7198
4861534648608176120
68.1818
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4660
99.3376
99.5947
73.4410
35992436861512
80.0000
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.4660
99.4311
99.5010
59.2336
19749113197429960
60.6061
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4664
99.3603
99.5726
85.2133
466346622
100.0000
cchapple-customSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.4664
99.3822
99.5507
61.1367
48263048742210
45.4545
rpoplin-dv42SNPtimap_l100_m2_e1*
99.4666
99.2947
99.6390
64.7230
4913634949129178121
67.9775
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50het
99.4666
99.1489
99.7863
69.8065
466446711
100.0000
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.4667
99.7326
99.2021
61.2371
373137332
66.6667
ckim-gatkINDEL**het
99.4669
99.6616
99.2730
62.2737
1934766571930951414578
40.8769
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4669
99.6693
99.2653
55.9536
3918133918290
0.0000
eyeh-varpipeSNP***
99.4670
99.9638
98.9751
20.3427
30535271107299971231063471
1.5163
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.4679
99.4172
99.5187
47.0701
853582741
25.0000
hfeng-pmm1SNP*map_l125_m2_e0*
99.4680
99.2509
99.6861
70.6559
463733504636714641
28.0822
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4680
99.0588
99.8807
41.3986
842883710
0.0000
jpowers-varprowlSNP*HG002complexvar*
99.4683
99.2937
99.6435
20.7160
749051532874940426811602
59.7538
astatham-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.4684
98.9668
99.9751
45.9140
402342402310
0.0000
hfeng-pmm1SNPtvmap_l100_m2_e1het
99.4686
99.2408
99.6974
66.3712
15817121158134812
25.0000
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4690
98.9437
100.0000
83.2738
843984300
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4691
99.4104
99.5279
48.5945
2529152530121
8.3333
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4691
99.4211
99.5171
82.2582
4122244122207
35.0000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4692
99.8734
99.0683
51.6226
157821595150
0.0000
egarrison-hhgaSNPtimap_l125_m2_e0*
99.4693
99.1110
99.8302
70.7438
29989269299895124
47.0588
hfeng-pmm1SNPtvmap_l100_m2_e0het
99.4695
99.2394
99.7006
66.3242
15657120156534712
25.5319
egarrison-hhgaSNPtimap_l125_m2_e1*
99.4698
99.1135
99.8287
70.7805
30298271302985224
46.1538
egarrison-hhgaSNPtvmap_l250_m2_e1homalt
99.4698
99.1543
99.7872
87.6462
938893822
100.0000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.4700
99.8227
99.1197
72.8749
563156355
100.0000
ndellapenna-hhgaSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4700
99.4059
99.5342
55.3861
20079120200889483
88.2979
jmaeng-gatkSNPtiHG002compoundhethomalt
99.4701
99.0127
99.9317
30.6381
732173732155
100.0000
ckim-gatkSNPtiHG002compoundhethomalt
99.4702
99.0262
99.9181
30.6914
732272732266
100.0000
ckim-dragenINDELI1_5*het
99.4703
99.6091
99.3319
60.8221
7873230978650529129
24.3856
gduggal-snapplatSNP*func_cds*
99.4703
99.3223
99.6187
31.7106
1802712318027695
7.2464
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4703
99.1784
99.7639
83.7209
845784521
50.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4703
99.1784
99.7639
84.6391
845784522
100.0000
hfeng-pmm3INDEL**het
99.4705
99.1923
99.7504
58.0356
1925651568192191481313
65.0728
egarrison-hhgaSNP*map_l250_m1_e0homalt
99.4705
99.1474
99.7957
86.3912
244221244255
100.0000
ckim-gatkINDELI16_PLUSHG002complexvarhet
99.4709
98.9474
100.0000
64.5414
658763400
jlack-gatkINDELI1_5segduphomalt
99.4709
99.3658
99.5763
92.8690
470347022
100.0000
raldana-dualsentieonSNPtvmap_l250_m2_e1homalt
99.4709
99.3658
99.5763
85.3530
940694042
50.0000
ckim-gatkSNPtisegduphomalt
99.4711
98.9873
99.9596
87.8310
742976742933
100.0000
astatham-gatkSNP*map_l125_m2_e0homalt
99.4712
99.0619
99.8839
66.1554
17212163172122016
80.0000
hfeng-pmm1SNPtimap_l250_m1_e0homalt
99.4712
99.5022
99.4403
86.8852
15998159992
22.2222