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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1525 1526 1527 1528 1529 1530 1531 1532 1533 ... 1720 1721 » 76401-76450 / 86044 show all
jli-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.4474	99.8648	99.0334	44.0841	10343	14	10348	101	98	97.0297
hfeng-pmm3	SNP	*	map_l150_m1_e0	*	99.4475	99.3825	99.5125	74.0748	30420	189	30414	149	23	15.4362
hfeng-pmm1	INDEL	I1_5	map_l100_m2_e1	homalt	99.4475	100.0000	98.9011	81.3078	540	0	540	6	4	66.6667
ndellapenna-hhga	INDEL	I1_5	func_cds	*	99.4475	100.0000	98.9011	31.8352	180	0	180	2	0	0.0000
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4475	100.0000	98.9011	66.2963	92	0	90	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4475	98.9011	100.0000	72.3149	540	6	531	0	0
egarrison-hhga	INDEL	I1_5	func_cds	*	99.4475	100.0000	98.9011	32.0896	180	0	180	2	0	0.0000
ckim-dragen	SNP	*	map_l125_m0_e0	homalt	99.4476	99.2253	99.6709	64.2590	6660	52	6663	22	19	86.3636
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.4476	99.1594	99.7375	38.8443	3421	29	3420	9	2	22.2222
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4479	99.1196	99.7784	77.4446	1351	12	1351	3	2	66.6667
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4480	99.1333	99.7647	74.0763	2974	26	2968	7	3	42.8571
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4485	99.9742	98.9283	61.3587	3877	1	3877	42	1	2.3810
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4485	99.0842	99.8155	76.9264	541	5	541	1	1	100.0000
jmaeng-gatk	INDEL	D1_5	HG002complexvar	*	99.4486	99.1930	99.7055	58.6476	32451	264	32505	96	76	79.1667
gduggal-snapplat	SNP	*	segdup	homalt	99.4486	99.0692	99.8310	88.7280	10643	100	10636	18	13	72.2222
hfeng-pmm1	INDEL	D1_5	map_l125_m2_e0	homalt	99.4490	99.1758	99.7238	84.2814	361	3	361	1	1	100.0000
egarrison-hhga	SNP	*	map_l125_m2_e0	*	99.4490	99.0882	99.8124	70.5171	46297	426	46297	87	41	47.1264
egarrison-hhga	SNP	*	map_l125_m2_e1	*	99.4493	99.0890	99.8122	70.5609	46772	430	46772	88	41	46.5909
gduggal-snapvard	SNP	ti	*	homalt	99.4493	98.9663	99.9370	16.0694	794738	8301	790421	498	326	65.4618
ckim-vqsr	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4494	99.3637	99.5353	61.3550	55277	354	55266	258	27	10.4651
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4495	99.2663	99.6334	73.6527	1353	10	1359	5	3	60.0000
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4496	99.8356	99.0666	73.6565	21863	36	21863	206	205	99.5146
ltrigg-rtg1	INDEL	D1_5	map_l125_m2_e0	homalt	99.4498	99.4505	99.4490	84.0999	362	2	361	2	2	100.0000
ckim-vqsr	INDEL	D1_5	HG002complexvar	*	99.4499	99.1625	99.7391	58.6120	32441	274	32494	85	69	81.1765
raldana-dualsentieon	SNP	*	map_l250_m1_e0	homalt	99.4502	99.1474	99.7549	84.1101	2442	21	2442	6	3	50.0000
ckim-dragen	INDEL	*	*	het	99.4503	99.5962	99.3048	61.2221	193349	784	192841	1350	335	24.8148
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4504	99.3304	99.5707	59.9377	19729	133	19713	85	64	75.2941
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4505	99.3666	99.5347	87.4509	2353	15	2353	11	10	90.9091
ckim-vqsr	INDEL	I1_5	func_cds	*	99.4505	100.0000	98.9071	47.8632	180	0	181	2	0	0.0000
dgrover-gatk	INDEL	I1_5	func_cds	*	99.4505	100.0000	98.9071	35.1064	180	0	181	2	0	0.0000
bgallagher-sentieon	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	86.0108	362	2	362	2	2	100.0000
astatham-gatk	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	86.1280	362	2	362	2	2	100.0000
astatham-gatk	INDEL	I1_5	func_cds	*	99.4505	100.0000	98.9071	34.4086	180	0	181	2	0	0.0000
bgallagher-sentieon	INDEL	I1_5	func_cds	*	99.4505	100.0000	98.9071	34.6429	180	0	181	2	0	0.0000
hfeng-pmm2	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	84.6219	362	2	362	2	2	100.0000
cchapple-custom	SNP	tv	HG002compoundhet	homalt	99.4506	98.9374	99.9692	37.6656	3352	36	3246	1	1	100.0000
jli-custom	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4506	99.7507	99.1523	64.1117	27609	69	27604	236	18	7.6271
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.4508	99.0372	99.8678	44.3327	2263	22	2266	3	0	0.0000
hfeng-pmm3	SNP	ti	map_l125_m2_e0	het	99.4510	99.3325	99.5698	72.2770	18750	126	18746	81	8	9.8765
jmaeng-gatk	SNP	*	func_cds	*	99.4513	99.8678	99.0382	31.9360	18126	24	18123	176	1	0.5682
hfeng-pmm1	SNP	ti	map_l125_m1_e0	*	99.4515	99.2091	99.6951	68.8149	29103	232	29099	89	25	28.0899
ckim-gatk	SNP	tv	HG002compoundhet	homalt	99.4517	99.0555	99.8512	42.9154	3356	32	3355	5	4	80.0000
dgrover-gatk	SNP	tv	map_l100_m0_e0	homalt	99.4517	99.0380	99.8689	62.1627	3809	37	3809	5	3	60.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4518	99.2381	99.6663	75.2850	5080	39	5078	17	10	58.8235
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4518	99.3532	99.5506	74.6799	768	5	886	4	2	50.0000
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4518	99.2341	99.6703	69.5244	907	7	907	3	0	0.0000
hfeng-pmm3	SNP	ti	map_l125_m2_e1	het	99.4518	99.3346	99.5693	72.3168	18960	127	18956	82	8	9.7561
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4518	99.8428	99.0640	53.5675	2540	4	2540	24	0	0.0000
hfeng-pmm1	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4519	98.9956	99.9125	62.9106	27400	278	27391	24	10	41.6667
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.4520	98.9651	99.9438	27.8836	7172	75	7111	4	4	100.0000

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