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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76351-76400 / 86044 show all
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.4418
98.9742
99.9138
61.4203
694772695363
50.0000
ckim-dragenSNPtimap_l125_m0_e0homalt
99.4419
99.1761
99.7092
62.9046
44543744571312
92.3077
egarrison-hhgaSNP*map_l125_m1_e0*
99.4419
99.0690
99.8177
68.7095
44905422449058241
50.0000
ckim-vqsrINDEL*func_cds*
99.4421
99.7753
99.1111
54.2683
444144641
25.0000
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4422
99.5809
99.3038
58.0347
4277184279305
16.6667
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.4424
99.5121
99.3729
70.5814
454792234547928731
10.8014
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.4424
99.5121
99.3729
70.5814
454792234547928731
10.8014
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4427
99.6296
99.2565
62.6389
269126720
0.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4427
99.6296
99.2565
60.1481
269126722
100.0000
rpoplin-dv42INDELD1_5**
99.4429
99.3110
99.5751
58.2332
1457341011145779622549
88.2637
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4429
99.1667
99.7207
68.4651
142812142841
25.0000
cchapple-customINDELI1_5func_cds*
99.4429
99.4444
99.4413
30.0781
179117810
0.0000
ltrigg-rtg1SNP*map_l250_m0_e0homalt
99.4431
99.3641
99.5223
91.8579
625462533
100.0000
ltrigg-rtg2SNP*map_l250_m0_e0homalt
99.4431
99.3641
99.5223
90.1798
625462533
100.0000
ghariani-varprowlSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.4433
100.0000
98.8927
33.8067
142701429169
56.2500
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.4435
99.1224
99.7666
66.9356
28012248282076617
25.7576
hfeng-pmm3SNPtimap_l125_m1_e0het
99.4436
99.3211
99.5663
71.0299
1814212418138798
10.1266
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4442
99.2523
99.6368
83.0397
4115314115157
46.6667
jlack-gatkSNPtifunc_cds*
99.4443
99.9565
98.9373
29.0994
137816137791481
0.6757
gduggal-bwafbSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.4445
99.7009
99.1894
39.5064
73332273426010
16.6667
gduggal-bwafbSNPtimap_l100_m0_e0homalt
99.4445
99.0224
99.8703
64.5919
7698767698106
60.0000
dgrover-gatkSNPtvmap_l100_m2_e1*
99.4445
99.4977
99.3914
69.7839
251561272515215429
18.8312
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4448
99.3729
99.5169
82.8933
4120264120208
40.0000
cchapple-customSNPtisegduphet
99.4449
99.8088
99.0837
92.7182
1200723120031115
4.5045
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.4451
98.8964
100.0000
34.3864
394344394600
rpoplin-dv42SNPtimap_l100_m0_e0homalt
99.4451
99.1253
99.7670
62.0330
77066877061817
94.4444
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4452
99.5833
99.3075
87.8041
717371754
80.0000
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4452
99.5833
99.3075
87.8041
717371754
80.0000
mlin-fermikitSNP*func_cds*
99.4453
99.2617
99.6295
19.0809
18016134180166748
71.6418
ckim-dragenSNPtimap_l150_m1_e0homalt
99.4455
99.1129
99.7803
65.1947
72626572671615
93.7500
bgallagher-sentieonSNP*map_sirenhet
99.4455
99.6483
99.2436
58.2943
906713209065769177
11.1433
bgallagher-sentieonINDEL**homalt
99.4457
99.8937
99.0017
58.7526
12503913312504912611237
98.0967
ckim-dragenSNPtimap_l150_m2_e1homalt
99.4457
99.1031
99.7907
67.9320
76246976291615
93.7500
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.4457
99.4809
99.4105
79.4316
4216224216257
28.0000
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4458
99.2885
99.6035
87.7940
12569125655
100.0000
ltrigg-rtg1SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4459
99.5389
99.3531
60.6036
1748781175081149
7.8947
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.4459
98.9979
99.8981
48.0313
1175611911761126
50.0000
hfeng-pmm2INDELI1_5func_cds*
99.4460
99.4444
99.4475
34.6570
179118010
0.0000
astatham-gatkSNPtvmap_l125_m2_e1homalt
99.4462
99.0451
99.8506
66.8391
601658601696
66.6667
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4462
99.3676
99.5249
88.0409
12578125766
100.0000
ckim-gatkINDELI1_5map_l100_m2_e1homalt
99.4465
99.8148
99.0809
82.4799
539153954
80.0000
dgrover-gatkINDELI1_5map_l100_m2_e1homalt
99.4465
99.8148
99.0809
82.3434
539153954
80.0000
ckim-vqsrINDELD6_15HG002complexvarhomalt
99.4466
99.9145
98.9831
63.0094
1168111681211
91.6667
ckim-gatkINDELD6_15HG002complexvarhomalt
99.4466
99.9145
98.9831
63.0094
1168111681211
91.6667
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4468
99.0921
99.8040
75.9768
152814152831
33.3333
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.4469
99.5112
99.3827
62.5253
3868193864249
37.5000
ckim-vqsrSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.4469
98.9759
99.9224
33.5509
386640386532
66.6667
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.4473
99.1113
99.7856
56.2027
16283146162903523
65.7143
astatham-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.4474
98.9552
99.9444
60.4265
107971141079464
66.6667
hfeng-pmm1INDELD6_15*homalt
99.4474
99.5732
99.3220
50.6075
62992762994342
97.6744