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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1522 1523 1524 1525 1526 1527 1528 1529 1530 ... 1720 1721 » 76251-76300 / 86044 show all
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.4314	99.5510	99.3121	70.6126	6208	28	6208	43	21	48.8372
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.4316	99.1580	99.7066	64.6054	3062	26	3059	9	2	22.2222
bgallagher-sentieon	SNP	*	map_l100_m1_e0	*	99.4317	99.5636	99.3001	65.4224	72087	316	72076	508	81	15.9449
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4318	98.8701	100.0000	74.0356	175	2	175	0	0
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4318	98.8701	100.0000	74.1124	175	2	175	0	0
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4318	98.8701	100.0000	74.3402	175	2	175	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4318	98.8701	100.0000	74.3402	175	2	175	0	0
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4318	98.8701	100.0000	74.3777	175	2	175	0	0
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4319	99.1366	99.7290	37.0539	18026	157	18031	49	28	57.1429
hfeng-pmm3	INDEL	I1_5	segdup	*	99.4321	99.1501	99.7156	94.0254	1050	9	1052	3	2	66.6667
gduggal-snapvard	SNP	ti	func_cds	*	99.4321	99.1151	99.7511	27.3375	13665	122	13628	34	14	41.1765
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.4322	99.2443	99.6207	88.9340	788	6	788	3	3	100.0000
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.4325	98.8713	100.0000	31.8818	438	5	438	0	0
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4326	99.2967	99.5689	75.2558	5083	36	5081	22	10	45.4545
cchapple-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4328	99.7924	99.0758	46.4998	6730	14	6754	63	6	9.5238
dgrover-gatk	SNP	tv	map_l100_m1_e0	*	99.4329	99.4817	99.3842	68.2243	24374	127	24370	151	29	19.2053
ndellapenna-hhga	SNP	tv	map_l150_m0_e0	homalt	99.4329	99.0211	99.8481	74.3625	1315	13	1315	2	1	50.0000
rpoplin-dv42	SNP	tv	map_l125_m2_e0	homalt	99.4329	99.0693	99.7991	69.7738	5961	56	5961	12	12	100.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4329	98.8722	100.0000	81.0382	263	3	263	0	0
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4329	98.8722	100.0000	80.9005	263	3	263	0	0
jli-custom	SNP	ti	map_l250_m2_e1	homalt	99.4331	98.9842	99.8861	85.6066	1754	18	1754	2	2	100.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.4334	99.3865	99.4804	79.7057	4212	26	4212	22	8	36.3636
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.4334	99.0346	99.8354	46.3028	6668	65	6670	11	7	63.6364
gduggal-snapfb	SNP	ti	*	*	99.4335	99.8078	99.0620	21.3991	2081510	4008	2082093	19715	1288	6.5331
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.4336	99.4962	99.3711	89.1468	790	4	790	5	5	100.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4336	99.0594	99.8106	68.9594	2633	25	2635	5	3	60.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.4336	99.4962	99.3711	89.5036	790	4	790	5	5	100.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.4337	98.8739	100.0000	85.4007	439	5	439	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.4337	98.8739	100.0000	84.5259	439	5	439	0	0
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.4337	98.8739	100.0000	84.6019	439	5	439	0	0
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4338	99.1525	99.7167	70.3361	351	3	352	1	1	100.0000
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4338	99.1525	99.7167	70.1606	351	3	352	1	1	100.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4340	99.0991	99.7712	75.6817	440	4	436	1	0	0.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4340	99.0991	99.7712	76.2758	440	4	436	1	0	0.0000
dgrover-gatk	INDEL	D1_5	map_l100_m2_e1	homalt	99.4341	99.1935	99.6759	84.1347	615	5	615	2	2	100.0000
dgrover-gatk	SNP	tv	map_l150_m2_e0	homalt	99.4343	99.0203	99.8518	71.6158	4043	40	4043	6	4	66.6667
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.4343	99.0271	99.8449	39.8008	3868	38	3863	6	3	50.0000
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4350	98.8764	100.0000	76.3441	88	1	88	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.4350	99.2509	99.6198	57.2358	265	2	262	1	0	0.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.4350	99.2509	99.6198	58.8419	265	2	262	1	0	0.0000
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4350	98.8764	100.0000	76.2803	88	1	88	0	0
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4350	98.8764	100.0000	80.0454	176	2	176	0	0
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4350	99.2481	99.6226	83.0346	264	2	264	1	1	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4350	98.8764	100.0000	76.2803	88	1	88	0	0
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4350	98.8764	100.0000	79.4632	176	2	176	0	0
jlack-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4351	99.7890	99.0837	56.5880	27900	59	27899	258	21	8.1395
ckim-gatk	SNP	ti	HG002compoundhet	het	99.4351	99.0847	99.7881	40.5181	9418	87	9418	20	15	75.0000
eyeh-varpipe	SNP	ti	map_siren	*	99.4355	99.7967	99.0768	57.9702	100151	204	97874	912	55	6.0307
hfeng-pmm3	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4357	98.9449	99.9314	53.1567	27664	295	27664	19	7	36.8421
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4357	99.8255	99.0490	49.7611	4004	7	4062	39	0	0.0000

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