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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1521 1522 1523 1524 1525 1526 1527 1528 1529 ... 1720 1721 » 76201-76250 / 86044 show all
dgrover-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.4253	98.8571	100.0000	66.5392	173	2	175	0	0
hfeng-pmm3	INDEL	I6_15	segdup	*	99.4253	98.8571	100.0000	91.7776	173	2	173	0	0
ckim-dragen	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.4253	98.8571	100.0000	67.2285	173	2	175	0	0
astatham-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.4253	98.8571	100.0000	66.6031	173	2	175	0	0
hfeng-pmm1	INDEL	D1_5	map_l125_m1_e0	homalt	99.4253	99.1404	99.7118	83.2690	346	3	346	1	1	100.0000
jli-custom	SNP	ti	map_l250_m2_e0	homalt	99.4256	98.9708	99.8846	85.5643	1731	18	1731	2	2	100.0000
jli-custom	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4256	99.8900	98.9654	59.3515	3634	4	3635	38	37	97.3684
ghariani-varprowl	SNP	*	segdup	homalt	99.4257	99.9069	98.9491	89.5722	10733	10	10734	114	65	57.0175
hfeng-pmm1	SNP	*	map_l100_m2_e1	het	99.4258	99.1322	99.7211	65.3522	46491	407	46480	130	32	24.6154
dgrover-gatk	INDEL	D1_5	map_l100_m2_e0	homalt	99.4258	99.1817	99.6711	84.0629	606	5	606	2	2	100.0000
jli-custom	SNP	tv	map_l100_m2_e1	*	99.4258	99.3157	99.5362	64.2630	25110	173	25109	117	30	25.6410
astatham-gatk	SNP	tv	map_l125_m1_e0	homalt	99.4259	99.0102	99.8451	64.3015	5802	58	5802	9	6	66.6667
ltrigg-rtg1	INDEL	D1_5	map_l125_m1_e0	homalt	99.4261	99.4269	99.4253	83.1477	347	2	346	2	2	100.0000
rpoplin-dv42	SNP	tv	map_l125_m1_e0	homalt	99.4262	99.0614	99.7937	67.2577	5805	55	5805	12	12	100.0000
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.4263	99.4533	99.3994	51.5732	3638	20	3641	22	17	77.2727
jli-custom	INDEL	I1_5	HG002complexvar	*	99.4264	98.9689	99.8882	55.8919	33019	344	33052	37	27	72.9730
hfeng-pmm1	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4265	98.9020	99.9566	52.6521	27652	307	27651	12	3	25.0000
ltrigg-rtg2	SNP	*	HG002compoundhet	homalt	99.4265	98.9241	99.9340	32.8863	10666	116	10603	7	6	85.7143
hfeng-pmm3	SNP	tv	map_l100_m0_e0	*	99.4268	99.3775	99.4762	69.0933	11015	69	11014	58	8	13.7931
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4268	99.6283	99.2261	57.2682	2948	11	2949	23	1	4.3478
hfeng-pmm2	INDEL	D1_5	map_l125_m1_e0	homalt	99.4269	99.4269	99.4269	83.7068	347	2	347	2	2	100.0000
astatham-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	99.4269	99.4269	99.4269	85.3484	347	2	347	2	2	100.0000
bgallagher-sentieon	INDEL	D1_5	map_l125_m1_e0	homalt	99.4269	99.4269	99.4269	85.2494	347	2	347	2	2	100.0000
cchapple-custom	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.4269	99.0751	99.7811	30.6904	1714	16	1823	4	3	75.0000
ghariani-varprowl	SNP	ti	map_l100_m1_e0	homalt	99.4271	99.0479	99.8092	60.5686	17789	171	17789	34	26	76.4706
ltrigg-rtg2	SNP	ti	map_l250_m0_e0	homalt	99.4273	99.5413	99.3135	89.5279	434	2	434	3	3	100.0000
ltrigg-rtg1	SNP	ti	map_l250_m0_e0	homalt	99.4273	99.5413	99.3135	91.3104	434	2	434	3	3	100.0000
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.4273	99.5631	99.2919	54.6106	1823	8	1823	13	0	0.0000
bgallagher-sentieon	SNP	*	map_l100_m2_e0	*	99.4275	99.5674	99.2880	67.0766	73644	320	73633	528	81	15.3409
hfeng-pmm3	SNP	*	map_l125_m2_e1	het	99.4275	99.3320	99.5233	72.3246	29442	198	29436	141	13	9.2199
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4277	99.0173	99.8415	46.1817	2519	25	2519	4	0	0.0000
asubramanian-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4277	98.8814	99.9800	49.5688	9989	113	9998	2	2	100.0000
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.4278	99.2381	99.6183	71.9185	521	4	522	2	0	0.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4278	98.9873	99.8723	47.9734	1564	16	1564	2	0	0.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4286	100.0000	98.8636	81.1159	87	0	87	1	0	0.0000
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4286	100.0000	98.8636	79.0974	87	0	87	1	0	0.0000
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4286	99.1139	99.7452	49.4364	1566	14	1566	4	0	0.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.4287	98.9934	99.8677	43.4696	2262	23	2265	3	0	0.0000
egarrison-hhga	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4287	99.1605	99.6983	57.8100	55164	467	55180	167	88	52.6946
dgrover-gatk	INDEL	*	segdup	homalt	99.4292	99.7917	99.0693	93.7134	958	2	958	9	8	88.8889
astatham-gatk	INDEL	*	segdup	homalt	99.4292	99.7917	99.0693	93.6623	958	2	958	9	8	88.8889
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4293	99.3243	99.5345	87.4555	2352	16	2352	11	10	90.9091
gduggal-bwafb	SNP	*	map_l100_m0_e0	homalt	99.4296	99.0017	99.8611	65.4925	11504	116	11504	16	10	62.5000
raldana-dualsentieon	INDEL	D1_5	*	*	99.4299	99.1168	99.7450	58.6151	145449	1296	145501	372	312	83.8710
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4305	99.1533	99.7093	77.3336	1054	9	1029	3	3	100.0000
bgallagher-sentieon	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4306	99.8701	98.9950	61.8984	35373	46	35362	359	20	5.5710
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4308	99.2074	99.6552	61.9169	28036	224	28038	97	74	76.2887
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.4310	99.4310	99.4310	47.4196	699	4	699	4	3	75.0000
ckim-gatk	SNP	ti	HG002compoundhet	*	99.4312	99.0159	99.8500	36.2044	17306	172	17306	26	21	80.7692
bgallagher-sentieon	SNP	*	map_l100_m2_e1	*	99.4314	99.5705	99.2927	67.0857	74416	321	74405	530	81	15.2830

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