PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76001-76050 / 86044 show all
ndellapenna-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4006
99.1437
99.6587
62.2119
27441237274499460
63.8298
dgrover-gatkINDEL***
99.4009
99.3458
99.4561
60.2776
342288225434215418711513
80.8658
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.4011
99.6723
99.1314
60.3701
182561826161
6.2500
egarrison-hhgaINDELD1_5map_sirenhomalt
99.4012
99.4863
99.3162
80.2231
11626116287
87.5000
rpoplin-dv42SNPti*hetalt
99.4012
99.8282
98.9779
50.2542
581158166
100.0000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.4012
99.2823
99.5204
47.6788
415341521
50.0000
ckim-dragenINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
99.4012
98.8095
100.0000
80.3121
166216400
eyeh-varpipeSNPtvmap_l100_m2_e1hetalt
99.4012
100.0000
98.8095
70.6294
43016621
50.0000
raldana-dualsentieonSNP*segduphet
99.4013
99.7344
99.0704
90.7424
1727146172651621
0.6173
ltrigg-rtg1INDEL*HG002complexvarhomalt
99.4013
98.9677
99.8388
52.4987
26747279266294332
74.4186
gduggal-bwafbSNPtvmap_l150_m1_e0homalt
99.4020
98.9863
99.8211
73.3556
390640390675
71.4286
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.4025
98.8681
99.9427
55.9677
174720174410
0.0000
gduggal-bwaplatSNPtvfunc_cds*
99.4027
98.9934
99.8155
42.5143
432744432780
0.0000
ltrigg-rtg1SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4029
99.5574
99.2487
52.2265
1777279178351357
5.1852
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.4030
99.1198
99.6877
55.5385
14640130150054723
48.9362
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.4032
98.9855
99.8245
35.5338
341535341262
33.3333
gduggal-bwafbSNP*map_l150_m2_e0homalt
99.4033
98.9657
99.8448
74.8531
11578121115781811
61.1111
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.4037
99.7908
99.0196
71.3644
477150552
40.0000
hfeng-pmm1SNPtimap_l100_m2_e1het
99.4037
99.0762
99.7333
64.8020
30674286306678220
24.3902
hfeng-pmm1SNPtimap_l100_m0_e0*
99.4038
99.1778
99.6308
67.2084
21592179215898022
27.5000
dgrover-gatkSNPtimap_l100_m2_e0het
99.4042
99.4416
99.3668
70.9135
304511713044419439
20.1031
egarrison-hhgaSNPtvsegduphet
99.4044
99.4326
99.3762
90.4305
5257305257332
6.0606
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4045
98.9789
99.8338
50.4652
6010626006105
50.0000
dgrover-gatkINDELD6_15HG002complexvarhomalt
99.4048
100.0000
98.8166
62.8338
1169011691414
100.0000
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4048
98.8166
100.0000
87.0810
501650100
jli-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4050
99.7685
99.0441
61.4043
35337823533334120
5.8651
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4050
99.1319
99.6795
63.7841
571562222
100.0000
raldana-dualsentieonSNPtvmap_l100_m2_e0*
99.4052
99.4847
99.3259
66.9200
24904129249001695
2.9586
raldana-dualsentieonSNPtvmap_l100_m2_e1*
99.4052
99.4898
99.3207
66.9624
25154129251501725
2.9070
gduggal-bwafbSNP*map_l150_m2_e1homalt
99.4055
98.9685
99.8465
74.9037
11705122117051811
61.1111
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4057
99.7831
99.0312
77.4842
920292096
66.6667
ndellapenna-hhgaSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4059
99.3368
99.4750
48.7096
1003567100435344
83.0189
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4059
99.4716
99.3404
88.6280
150681506109
90.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.2267
502550211
100.0000
jlack-gatkSNPtvmap_l100_m2_e1homalt
99.4059
98.9357
99.8806
62.6933
9203999203117
63.6364
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.2267
502550211
100.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.4311
502550210
0.0000
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.4347
502550211
100.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.2868
502550211
100.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.4061
98.8192
100.0000
47.1948
401748401900
qzeng-customSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.4064
99.1978
99.6159
41.7997
7296597261286
21.4286
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4064
99.2885
99.5246
88.1335
12569125666
100.0000
egarrison-hhgaSNPtvmap_l125_m2_e1*
99.4064
99.0334
99.7822
70.1626
16496161164963617
47.2222
egarrison-hhgaSNPtvmap_l125_m2_e0*
99.4065
99.0357
99.7800
70.1050
16330159163303617
47.2222
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.4066
99.4274
99.3858
50.7439
1180768118127323
31.5068
jlack-gatkINDELD1_5HG002complexvar*
99.4067
99.2878
99.5259
58.0276
324822333253915592
59.3548
rpoplin-dv42SNP*map_l100_m2_e0*
99.4070
99.2740
99.5404
65.1757
7342753773416339198
58.4071
ltrigg-rtg2SNPtvmap_siren*
99.4071
99.1030
99.7130
49.8109
45518412455171319
6.8702
dgrover-gatkINDELD1_5map_l100_m1_e0homalt
99.4073
99.1554
99.6604
83.4225
587558722
100.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.4073
99.5608
99.2542
75.3973
14507641450710912
11.0092