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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
75951-76000 / 86044 show all
gduggal-snapplatSNPtifunc_cdshet
99.3942
99.3532
99.4351
33.3621
8449558449484
8.3333
ckim-dragenINDEL*HG002complexvar*
99.3944
99.2565
99.5327
58.0987
7636657276037357301
84.3137
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.3944
99.6258
99.1640
40.2940
213082135185
27.7778
jpowers-varprowlSNP*HG002complexvarhet
99.3948
98.9553
99.8382
20.0313
4606324863460862747150
20.0803
raldana-dualsentieonINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3948
99.8304
98.9630
72.1359
3531635313737
100.0000
dgrover-gatkINDELI16_PLUSHG002complexvarhet
99.3949
98.7970
100.0000
64.8333
657863300
bgallagher-sentieonINDELI16_PLUSHG002complexvarhet
99.3949
98.7970
100.0000
64.2575
657863300
ckim-dragenINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3951
99.8402
98.9540
76.8921
218643521853231230
99.5671
hfeng-pmm1SNPtimap_l100_m1_e0het
99.3951
99.0615
99.7309
63.4093
29661281296548020
25.0000
hfeng-pmm3SNPtvmap_l150_m2_e1*
99.3954
99.3479
99.4429
75.5927
114277511425649
14.0625
jlack-gatkSNP*map_l100_m2_e0homalt
99.3957
98.8991
99.8972
61.0320
27220303272202822
78.5714
gduggal-snapplatSNPtvsegduphomalt
99.3958
99.0735
99.7201
90.1395
320830320797
77.7778
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.3959
99.1682
99.6246
82.9296
2623222654106
60.0000
gduggal-bwaplatSNPtvfunc_cdshet
99.3960
99.0967
99.6971
49.3090
263324263380
0.0000
jlack-gatkSNP*map_l100_m2_e1homalt
99.3962
98.8991
99.8982
60.9989
27490306274902822
78.5714
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.3962
98.9698
99.8262
37.7685
403542402072
28.5714
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.3971
98.8014
100.0000
18.5915
577757800
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.3971
98.8014
100.0000
18.5915
577757800
jli-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.3971
98.8014
100.0000
18.3616
577757800
ckim-gatkSNP*HG002compoundhet*
99.3973
99.0009
99.7970
41.7198
25564258255615238
73.0769
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.3973
99.2341
99.5609
67.8773
907790740
0.0000
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.3974
99.2449
99.5503
79.5805
4206324206195
26.3158
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.3976
99.2333
99.5624
89.0421
906791044
100.0000
hfeng-pmm1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3976
98.8024
100.0000
50.1134
132016132000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.3977
98.8829
99.9179
55.5579
1460516514609123
25.0000
ltrigg-rtg1INDELD1_5map_l150_m2_e1homalt
99.3980
99.5968
99.2000
86.4352
247124822
100.0000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.3981
98.8035
100.0000
36.3869
272533272900
rpoplin-dv42INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3981
99.0572
99.7414
71.0854
30471290304697973
92.4051
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.3981
98.9726
99.8273
17.0487
578657811
100.0000
rpoplin-dv42SNP*map_l100_m1_e0*
99.3983
99.2625
99.5346
63.1596
7186953471858336196
58.3333
jlack-gatkINDELD1_5map_sirenhomalt
99.3983
98.9726
99.8277
79.2900
115612115922
100.0000
egarrison-hhgaSNPtvmap_l125_m1_e0*
99.3983
99.0135
99.7861
68.1855
15858158158583417
50.0000
egarrison-hhgaSNPtimap_l100_m2_e1het
99.3984
98.9890
99.8111
65.4651
30647313306485818
31.0345
raldana-dualsentieonSNPtvmap_l100_m1_e0*
99.3984
99.4735
99.3234
65.0677
24372129243681665
3.0121
dgrover-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3985
99.2535
99.5440
74.5809
6395048163963293257
87.7133
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3985
98.9521
99.8489
49.8485
132214132220
0.0000
gduggal-bwafbSNP*func_cdshet
99.3985
99.9462
98.8568
33.7832
111556111551292
1.5504
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.3987
98.9438
99.8577
44.3311
562160561488
100.0000
hfeng-pmm1SNPtimap_l100_m2_e0het
99.3987
99.0660
99.7336
64.8032
30336286303298120
24.6914
hfeng-pmm1SNP*map_l100_m0_e0*
99.3989
99.1931
99.6055
67.8013
325762653257212937
28.6822
gduggal-bwafbSNPtimap_l150_m2_e1homalt
99.3993
98.9471
99.8557
74.6736
7612817612116
54.5455
gduggal-bwafbSNPtvmap_l100_m0_e0homalt
99.3993
98.9600
99.8426
67.1804
380640380664
66.6667
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.3995
99.6241
99.1760
40.3752
1325513241111
100.0000
astatham-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.3998
98.8910
99.9138
41.4542
463752463441
25.0000
gduggal-bwafbSNPtimap_l150_m2_e0homalt
99.3999
98.9496
99.8542
74.6089
7536807536116
54.5455
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4000
99.1045
99.6973
59.5840
996998831
33.3333
jlack-gatkSNPtvmap_l100_m2_e0homalt
99.4002
98.9255
99.8795
62.7206
9115999115117
63.6364
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4003
99.3113
99.4894
56.4059
66334666253432
94.1176
hfeng-pmm3INDELI1_5map_siren*
99.4006
99.2346
99.5672
79.0750
2982232991133
23.0769
ckim-vqsrSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4006
99.5116
99.2899
63.6333
352461733523525221
8.3333