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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1514 1515 1516 1517 1518 1519 1520 1521 1522 ... 1720 1721 » 75851-75900 / 86044 show all
rpoplin-dv42	SNP	ti	map_l150_m2_e0	homalt	99.3810	99.0809	99.6830	73.3835	7546	70	7546	24	23	95.8333
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.3814	98.9733	99.7930	65.0253	482	5	482	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l150_m2_e0	homalt	99.3814	99.5868	99.1770	86.5150	241	1	241	2	2	100.0000
egarrison-hhga	INDEL	I1_5	map_siren	homalt	99.3814	99.4224	99.3405	78.4317	1205	7	1205	8	4	50.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3817	99.0272	99.7387	76.7007	1527	15	1527	4	3	75.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3818	99.2284	99.5356	87.4927	1286	10	1286	6	6	100.0000
ltrigg-rtg2	INDEL	I1_5	HG002complexvar	*	99.3818	99.0798	99.6856	52.9504	33055	307	32342	102	66	64.7059
ckim-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3819	99.8008	98.9665	67.1777	17533	35	17523	183	15	8.1967
hfeng-pmm2	SNP	*	map_l125_m2_e1	*	99.3819	99.4704	99.2936	73.5231	46952	250	46946	334	39	11.6766
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3822	99.8227	98.9455	72.2032	563	1	563	6	6	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3822	99.3056	99.4590	87.2487	1287	9	1287	7	6	85.7143
jlack-gatk	INDEL	I1_5	map_siren	homalt	99.3823	99.4224	99.3421	78.6217	1205	7	1208	8	5	62.5000
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.3827	98.8452	99.9260	60.8128	10785	126	10801	8	5	62.5000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3829	99.4334	99.3324	81.4625	6844	39	6844	46	14	30.4348
gduggal-bwafb	SNP	ti	map_l150_m1_e0	homalt	99.3830	98.9218	99.8485	72.6540	7248	79	7248	11	6	54.5455
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3832	99.0868	99.6813	36.6712	10634	98	10635	34	19	55.8824
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.3832	98.7739	100.0000	75.8608	3867	48	3884	0	0
jli-custom	SNP	*	map_l250_m2_e0	homalt	99.3833	98.9948	99.7749	85.5202	2659	27	2659	6	6	100.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3833	100.0000	98.7741	72.8095	564	0	564	7	7	100.0000
hfeng-pmm3	SNP	tv	map_l125_m2_e1	het	99.3837	99.3272	99.4402	72.3386	10482	71	10480	59	5	8.4746
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3837	99.3515	99.4160	78.0297	1532	10	1532	9	5	55.5556
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.3838	98.8184	99.9558	47.5296	2258	27	2261	1	0	0.0000
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.3840	98.8562	99.9174	59.5119	1210	14	1210	1	1	100.0000
gduggal-snapfb	SNP	tv	segdup	homalt	99.3840	99.6603	99.1093	91.8109	3227	11	3227	29	8	27.5862
jlack-gatk	SNP	ti	map_l100_m1_e0	homalt	99.3843	98.8697	99.9044	57.5961	17757	203	17757	17	15	88.2353
hfeng-pmm3	INDEL	*	segdup	het	99.3844	99.1132	99.6571	94.2790	1453	13	1453	5	0	0.0000
gduggal-bwafb	SNP	ti	map_l125_m0_e0	homalt	99.3844	98.8644	99.9100	71.6564	4440	51	4440	4	3	75.0000
hfeng-pmm3	INDEL	D6_15	*	homalt	99.3845	99.5416	99.2279	50.7795	6297	29	6297	49	45	91.8367
ltrigg-rtg2	INDEL	I1_5	map_l125_m1_e0	homalt	99.3846	99.0826	99.6885	78.7135	324	3	320	1	0	0.0000
cchapple-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3846	99.2919	99.4776	66.9410	3225	23	3237	17	3	17.6471
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3852	99.0251	99.7479	54.5094	14626	144	14641	37	15	40.5405
ltrigg-rtg2	INDEL	I1_5	HG002complexvar	het	99.3853	99.2028	99.5685	52.2881	18044	145	17305	75	44	58.6667
hfeng-pmm2	INDEL	D6_15	*	homalt	99.3853	99.6838	99.0886	51.6854	6306	20	6306	58	54	93.1034
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3854	100.0000	98.7784	71.6337	564	0	566	7	7	100.0000
ghariani-varprowl	SNP	tv	HG002complexvar	homalt	99.3856	99.9338	98.8434	25.4168	95048	63	95121	1113	736	66.1276
jlack-gatk	SNP	*	map_l100_m1_e0	homalt	99.3858	98.8816	99.8952	58.5121	26701	302	26701	28	22	78.5714
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3861	99.7540	99.0208	56.4034	2433	6	2427	24	3	12.5000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.3862	99.1554	99.6182	87.6455	2348	20	2348	9	8	88.8889
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3863	99.1243	99.6497	55.8050	566	5	569	2	1	50.0000
ltrigg-rtg2	INDEL	D6_15	map_l150_m2_e0	*	99.3865	98.7805	100.0000	87.6755	81	1	79	0	0
rpoplin-dv42	INDEL	D6_15	map_l150_m2_e0	*	99.3865	98.7805	100.0000	92.0821	81	1	81	0	0
jli-custom	INDEL	D6_15	map_l150_m2_e0	*	99.3865	98.7805	100.0000	91.1281	81	1	81	0	0
hfeng-pmm2	INDEL	D6_15	map_l150_m2_e0	*	99.3865	98.7805	100.0000	92.0354	81	1	81	0	0
hfeng-pmm3	INDEL	D6_15	map_l150_m2_e0	*	99.3865	98.7805	100.0000	90.8989	81	1	81	0	0
eyeh-varpipe	SNP	tv	map_l100_m2_e0	hetalt	99.3865	100.0000	98.7805	70.8703	42	0	162	2	1	50.0000
raldana-dualsentieon	INDEL	I1_5	HG002complexvar	het	99.3867	98.9004	99.8777	56.7573	17989	200	17970	22	13	59.0909
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3868	99.5904	99.1841	39.0236	1945	8	1945	16	16	100.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3872	99.0063	99.7710	48.5556	11757	118	11762	27	17	62.9630
rpoplin-dv42	SNP	ti	map_l150_m2_e1	homalt	99.3872	99.0901	99.6862	73.4415	7623	70	7623	24	23	95.8333
jli-custom	SNP	tv	segdup	het	99.3872	99.6974	99.0789	90.9422	5271	16	5271	49	0	0.0000

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