PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
75751-75800 / 86044 show all
ndellapenna-hhgaINDELI1_5segduphomalt
99.3684
99.7886
98.9518
92.7375
472147255
100.0000
bgallagher-sentieonSNPtimap_l250_m2_e0homalt
99.3685
98.9708
99.7695
86.1400
173118173143
75.0000
ndellapenna-hhgaSNPtimap_sirenhet
99.3687
98.9067
99.8350
52.2716
617006826170110239
38.2353
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3687
98.9523
99.7887
50.3034
425045425090
0.0000
cchapple-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3690
99.6782
99.0618
71.6714
306629930621290283
97.5862
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.3692
98.9653
99.7765
72.8230
133914133931
33.3333
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.3693
98.9623
99.7797
53.9086
181219181240
0.0000
jlack-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50het
99.3694
99.5142
99.2251
69.4063
30731530732412
50.0000
raldana-dualsentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3694
98.9198
99.8231
52.8249
2765730227656499
18.3673
egarrison-hhgaSNP*map_l100_m2_e1het
99.3694
98.9552
99.7871
65.4429
46408490464099931
31.3131
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3694
98.9529
99.7895
80.5964
9451094821
50.0000
raldana-dualsentieonSNPtvmap_sirenhet
99.3697
99.4827
99.2570
59.7589
28461148284562132
0.9390
dgrover-gatkSNP*map_l100_m2_e0het
99.3701
99.4698
99.2707
71.6313
461532464614233963
18.5841
rpoplin-dv42SNPtimap_l150_m1_e0homalt
99.3702
99.0583
99.6841
71.0853
72586972582322
95.6522
gduggal-snapplatSNP**homalt
99.3703
98.8374
99.9089
19.1469
11664421372011662141063359
33.7723
gduggal-bwavardSNPtifunc_cds*
99.3703
99.0716
99.6707
28.1478
13659128136224515
33.3333
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3703
99.3703
99.3703
89.2862
789578955
100.0000
jli-customSNPtimap_l125_m2_e1*
99.3704
99.1266
99.6153
68.7864
303022673030011741
35.0427
ltrigg-rtg1SNP*tech_badpromotershomalt
99.3711
98.7500
100.0000
48.7013
7917900
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
99.3711
98.9975
99.7475
60.5184
395439511
100.0000
jlack-gatkSNP*tech_badpromotershomalt
99.3711
98.7500
100.0000
48.0263
7917900
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
99.3716
99.1196
99.6249
78.0612
135112132853
60.0000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
99.3716
99.1196
99.6249
77.6829
135112132853
60.0000
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3717
99.3717
99.3717
79.9201
949694965
83.3333
hfeng-pmm3SNPtvmap_l150_m1_e0*
99.3718
99.3127
99.4310
74.1360
108377510835629
14.5161
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.3719
99.3026
99.4413
55.9656
712571243
75.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3720
99.7481
98.9987
88.0853
792279186
75.0000
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.3720
99.3348
99.4092
74.3463
13449134683
37.5000
jpowers-varprowlSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.3721
99.2620
99.4824
48.6065
4035304036214
19.0476
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3723
99.3395
99.4052
88.3238
150410150499
100.0000
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.3724
98.7526
100.0000
45.7143
475647500
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.3726
99.0232
99.7245
73.4687
5069505067144
28.5714
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3727
99.4055
99.3399
88.6347
150591505109
90.0000
ltrigg-rtg2INDELD1_5func_cds*
99.3730
99.3711
99.3750
31.0345
158115910
0.0000
ckim-vqsrINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3731
99.4054
99.3408
76.0979
4798428747771317259
81.7035
dgrover-gatkSNPtimap_l125_m2_e0*
99.3734
99.3258
99.4210
73.9134
300542043005017542
24.0000
hfeng-pmm3SNPtimap_l100_m0_e0het
99.3735
99.2634
99.4838
69.6444
1388010313877727
9.7222
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.3735
99.2041
99.5436
81.7204
4113334144198
42.1053
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.3736
99.2639
99.4836
88.1512
26972026971413
92.8571
ckim-vqsrINDELI1_5HG002complexvar*
99.3737
98.9030
99.8489
56.8918
32997366330425041
82.0000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.3741
98.7559
100.0000
56.8481
166721167300
jmaeng-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
99.3742
99.4987
99.2500
65.9284
397239732
66.6667
hfeng-pmm2SNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.3742
98.8879
99.8652
37.8733
666975666990
0.0000
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
99.3742
99.4987
99.2500
62.1212
397239732
66.6667
gduggal-bwafbSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.3744
99.5648
99.1847
37.2000
3889173893327
21.8750
jli-customSNPtimap_l250_m1_e0homalt
99.3746
98.8799
99.8743
84.2895
158918158922
100.0000
dgrover-gatkSNP*map_l100_m2_e1het
99.3747
99.4755
99.2742
71.6392
466522464664134163
18.4751
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.3750
99.1863
99.5644
51.3896
36573036571613
81.2500
asubramanian-gatkINDELD1_5*het
99.3754
99.1025
99.6499
59.9427
8678878686804305126
41.3115
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.3754
98.8773
99.8785
57.1429
246628246630
0.0000