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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1511 1512 1513 1514 1515 1516 1517 1518 1519 ... 1720 1721 » 75701-75750 / 86044 show all
ndellapenna-hhga	SNP	tv	map_l250_m2_e1	homalt	99.3631	98.9429	99.7868	87.0245	936	10	936	2	2	100.0000
rpoplin-dv42	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3631	98.7342	100.0000	24.9201	234	3	235	0	0
ltrigg-rtg1	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3631	98.7342	100.0000	39.3401	234	3	239	0	0
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.3632	99.1908	99.5362	36.2528	1716	14	1717	8	6	75.0000
jli-custom	SNP	ti	map_l125_m2_e0	*	99.3639	99.1176	99.6114	68.7298	29991	267	29989	117	41	35.0427
ltrigg-rtg2	SNP	*	HG002compoundhet	*	99.3639	98.9737	99.7572	37.9767	25557	265	25473	62	19	30.6452
dgrover-gatk	SNP	*	map_l125_m0_e0	homalt	99.3639	98.9124	99.8196	67.9886	6639	73	6639	12	8	66.6667
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3640	99.2519	99.4764	81.8355	398	3	380	2	1	50.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3640	99.1541	99.5747	61.1334	1641	14	1639	7	4	57.1429
asubramanian-gatk	INDEL	I1_5	segdup	homalt	99.3644	99.1543	99.5754	92.7483	469	4	469	2	2	100.0000
ckim-vqsr	SNP	tv	*	het	99.3645	98.9162	99.8170	31.1430	585283	6413	585211	1073	39	3.6347
raldana-dualsentieon	SNP	*	map_l100_m2_e1	*	99.3646	99.4032	99.3261	65.5411	74291	446	74280	504	23	4.5635
hfeng-pmm3	INDEL	D1_5	map_siren	het	99.3647	99.4730	99.2567	77.5211	2265	12	2270	17	2	11.7647
hfeng-pmm1	SNP	ti	map_l150_m2_e0	*	99.3647	99.1322	99.5983	75.0541	20334	178	20330	82	23	28.0488
bgallagher-sentieon	SNP	tv	map_l100_m2_e1	*	99.3647	99.6084	99.1222	68.5080	25184	99	25180	223	31	13.9013
egarrison-hhga	SNP	*	map_l100_m2_e0	het	99.3648	98.9461	99.7870	65.4283	45910	489	45911	98	31	31.6327
jmaeng-gatk	INDEL	I1_5	HG002complexvar	*	99.3649	98.9270	99.8067	56.9963	33005	358	33051	64	46	71.8750
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.3650	99.8551	98.8796	40.1582	3445	5	3442	39	2	5.1282
egarrison-hhga	SNP	*	map_l100_m1_e0	het	99.3656	98.9352	99.7999	63.8790	44876	483	44877	90	31	34.4444
egarrison-hhga	SNP	ti	map_l150_m1_e0	*	99.3657	98.9448	99.7902	73.6441	19504	208	19504	41	20	48.7805
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3658	98.8433	99.8937	85.4985	940	11	940	1	1	100.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.3658	98.8087	99.9291	26.8533	1410	17	1410	1	1	100.0000
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.3658	98.8087	99.9291	27.0801	1410	17	1410	1	1	100.0000
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.3658	98.9242	99.8113	35.2869	2115	23	2116	4	1	25.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3658	98.8433	99.8937	85.4985	940	11	940	1	1	100.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3658	98.8433	99.8937	85.6380	940	11	940	1	0	0.0000
ltrigg-rtg2	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3659	98.8427	99.8947	68.5558	30405	356	30350	32	26	81.2500
rpoplin-dv42	INDEL	D1_5	HG002complexvar	*	99.3660	99.1319	99.6013	57.4494	32431	284	32474	130	115	88.4615
raldana-dualsentieon	SNP	ti	map_siren	het	99.3661	99.3941	99.3382	55.1273	62004	378	61995	413	8	1.9371
astatham-gatk	SNP	ti	map_l150_m2_e1	homalt	99.3663	98.8561	99.8818	70.6476	7605	88	7605	9	8	88.8889
hfeng-pmm1	SNP	ti	map_l150_m2_e1	*	99.3663	99.1362	99.5975	75.1263	20544	179	20540	83	23	27.7108
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.3666	99.2095	99.5242	88.1418	1255	10	1255	6	6	100.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3666	99.2968	99.4366	88.7015	1412	10	1412	8	7	87.5000
jmaeng-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3667	99.1478	99.5866	78.9281	6050	52	6022	25	8	32.0000
hfeng-pmm3	SNP	tv	map_l250_m2_e1	homalt	99.3671	99.5772	99.1579	88.1116	942	4	942	8	4	50.0000
gduggal-bwafb	INDEL	I1_5	segdup	homalt	99.3671	99.5772	99.1579	92.9136	471	2	471	4	4	100.0000
ckim-isaac	INDEL	D1_5	func_cds	*	99.3671	98.7421	100.0000	33.7553	157	2	157	0	0
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	99.3671	100.0000	98.7421	70.8257	157	0	157	2	0	0.0000
egarrison-hhga	SNP	*	tech_badpromoters	*	99.3671	100.0000	98.7421	47.8689	157	0	157	2	0	0.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	99.3671	100.0000	98.7421	68.5771	157	0	157	2	0	0.0000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	99.3671	100.0000	98.7421	68.1363	157	0	157	2	0	0.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	99.3671	100.0000	98.7421	70.8257	157	0	157	2	0	0.0000
astatham-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3672	99.1883	99.5468	74.2740	63908	523	63921	291	257	88.3162
raldana-dualsentieon	SNP	*	map_siren	het	99.3673	99.4219	99.3127	56.6962	90465	526	90451	626	10	1.5974
jli-custom	INDEL	*	*	*	99.3675	99.0788	99.6580	57.6935	341368	3174	341213	1171	951	81.2126
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3676	99.3641	99.3711	65.4796	27502	176	27492	174	18	10.3448
egarrison-hhga	SNP	ti	map_l100_m0_e0	*	99.3678	98.9068	99.8331	66.9886	21533	238	21534	36	20	55.5556
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3679	99.4491	99.2868	52.6423	6679	37	6682	48	39	81.2500
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3683	98.8824	99.8589	49.4773	4247	48	4247	6	0	0.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.3684	98.7448	100.0000	70.7210	472	6	467	0	0

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