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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1508 1509 1510 1511 1512 1513 1514 1515 1516 ... 1720 1721 » 75551-75600 / 86044 show all
ltrigg-rtg1	INDEL	D6_15	*	homalt	99.3481	98.8935	99.8070	44.0385	6256	70	6207	12	9	75.0000
jli-custom	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3482	99.1423	99.5550	73.6647	47857	414	47648	213	149	69.9531
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3482	99.9034	98.7991	36.8548	7240	7	7240	88	87	98.8636
jli-custom	INDEL	I1_5	segdup	het	99.3483	99.2565	99.4403	94.7265	534	4	533	3	0	0.0000
astatham-gatk	SNP	ti	map_l150_m1_e0	homalt	99.3483	98.8263	99.8759	68.2477	7241	86	7241	9	8	88.8889
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.3487	98.9909	99.7091	60.6090	4807	49	4798	14	2	14.2857
rpoplin-dv42	SNP	ti	map_l100_m2_e0	het	99.3487	99.1444	99.5539	65.6465	30360	262	30352	136	82	60.2941
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.3488	99.7594	98.9416	60.6388	2488	6	2524	27	1	3.7037
ltrigg-rtg2	INDEL	I1_5	map_l100_m2_e1	homalt	99.3490	99.0741	99.6255	78.1237	535	5	532	2	1	50.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.3490	99.4898	99.2086	89.1572	1755	9	1755	14	13	92.8571
hfeng-pmm1	SNP	ti	map_l150_m1_e0	*	99.3490	99.1071	99.5921	73.5929	19536	176	19532	80	23	28.7500
jli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3492	99.5652	99.1342	68.6141	229	1	229	2	2	100.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3492	99.5652	99.1342	68.2256	229	1	229	2	2	100.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3492	99.1342	99.5652	27.5591	458	4	458	2	2	100.0000
rpoplin-dv42	SNP	ti	map_l100_m2_e1	het	99.3494	99.1473	99.5523	65.6527	30696	264	30688	138	83	60.1449
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.3494	99.4543	99.2447	49.9340	5650	31	5650	43	42	97.6744
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3495	98.9177	99.7849	42.8747	457	5	464	1	1	100.0000
ghariani-varprowl	SNP	*	*	*	99.3496	99.8685	98.8361	25.2137	3050577	4016	3051086	35930	2639	7.3448
hfeng-pmm2	INDEL	D1_5	segdup	het	99.3497	99.2775	99.4220	94.7071	687	5	688	4	0	0.0000
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3497	99.9156	98.7902	51.5758	2368	2	2368	29	29	100.0000
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.3498	98.7237	99.9839	45.5999	6188	80	6193	1	1	100.0000
astatham-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3499	98.9224	99.7812	72.1171	459	5	456	1	0	0.0000
jmaeng-gatk	SNP	*	HG002compoundhet	*	99.3502	98.8847	99.8202	41.8705	25534	288	25531	46	39	84.7826
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.3503	99.2642	99.4366	68.8610	11467	85	11472	65	58	89.2308
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.3503	99.2642	99.4366	68.8610	11467	85	11472	65	58	89.2308
gduggal-bwavard	SNP	tv	func_cds	homalt	99.3503	98.7089	100.0000	25.9620	1682	22	1674	0	0
eyeh-varpipe	SNP	ti	map_l100_m2_e0	*	99.3504	99.7181	98.9854	68.9913	48823	138	47903	491	32	6.5173
ltrigg-rtg1	INDEL	I1_5	map_l100_m2_e1	homalt	99.3504	99.4444	99.2565	81.6068	537	3	534	4	2	50.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.3506	98.7097	100.0000	81.9036	153	2	154	0	0
dgrover-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3506	99.1379	99.5643	72.3494	460	4	457	2	0	0.0000
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3508	99.8517	98.8550	44.7482	6734	10	6734	78	1	1.2821
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.3508	99.3647	99.3369	68.1260	3128	20	3146	21	3	14.2857
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.3508	99.1580	99.5443	63.5414	3062	26	3058	14	2	14.2857
rpoplin-dv42	SNP	*	map_l150_m2_e1	homalt	99.3508	98.9854	99.7189	73.6505	11707	120	11707	33	32	96.9697
rpoplin-dv42	INDEL	I1_5	HG002complexvar	*	99.3509	99.0558	99.6477	56.5141	33048	315	33091	117	105	89.7436
hfeng-pmm3	SNP	*	map_l100_m0_e0	het	99.3509	99.2596	99.4424	70.0348	21048	157	21044	118	11	9.3220
gduggal-snapvard	SNP	ti	func_cds	het	99.3512	99.0945	99.6092	31.0131	8427	77	8411	33	13	39.3939
raldana-dualsentieon	INDEL	I1_5	map_l100_m2_e1	homalt	99.3513	99.2593	99.4434	80.9339	536	4	536	3	2	66.6667
hfeng-pmm1	SNP	*	map_l150_m2_e0	*	99.3518	99.1272	99.5773	75.1179	31574	278	31568	134	37	27.6119
astatham-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3521	100.0000	98.7124	72.0958	230	0	230	3	2	66.6667
astatham-gatk	SNP	*	*	het	99.3521	98.7393	99.9725	20.1637	1849967	23620	1849845	508	95	18.7008
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3521	100.0000	98.7124	71.6889	230	0	230	3	2	66.6667
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3521	100.0000	98.7124	71.6889	230	0	230	3	2	66.6667
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3521	100.0000	98.7124	72.0288	230	0	230	3	2	66.6667
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3521	100.0000	98.7124	71.7576	230	0	230	3	2	66.6667
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3521	100.0000	98.7124	72.0288	230	0	230	3	2	66.6667
ckim-dragen	SNP	tv	func_cds	*	99.3521	99.9771	98.7347	37.1039	4370	1	4370	56	0	0.0000
ndellapenna-hhga	SNP	*	map_siren	het	99.3524	98.8878	99.8214	53.1990	89979	1012	89980	161	58	36.0248
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.3525	99.2706	99.4347	70.0110	2994	22	2990	17	6	35.2941
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3525	99.2040	99.5015	66.2630	997	8	998	5	4	80.0000

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