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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1507 1508 1509 1510 1511 1512 1513 1514 1515 ... 1720 1721 » 75501-75550 / 86044 show all
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.3410	99.5071	99.1754	50.3830	5653	28	5653	47	47	100.0000
ckim-gatk	INDEL	*	map_siren	homalt	99.3412	99.2844	99.3980	81.7081	2636	19	2642	16	9	56.2500
ndellapenna-hhga	SNP	*	map_l100_m2_e1	*	99.3413	98.8761	99.8109	63.7314	73897	840	73899	140	63	45.0000
ltrigg-rtg2	SNP	tv	HG002compoundhet	*	99.3414	98.9802	99.7052	44.7928	8832	91	8795	26	6	23.0769
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.3414	99.5344	99.1492	66.7959	30998	145	30998	266	16	6.0150
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.3414	99.5344	99.1492	66.7959	30998	145	30998	266	16	6.0150
rpoplin-dv42	INDEL	I1_5	map_l100_m2_e0	homalt	99.3415	99.4350	99.2481	82.1297	528	3	528	4	2	50.0000
jpowers-varprowl	SNP	ti	func_cds	het	99.3416	99.3650	99.3183	29.2650	8450	54	8450	58	2	3.4483
jmaeng-gatk	SNP	ti	HG002complexvar	homalt	99.3419	98.7072	99.9848	18.4737	190962	2501	190952	29	26	89.6552
dgrover-gatk	INDEL	*	map_siren	homalt	99.3423	99.4350	99.2498	81.7385	2640	15	2646	20	11	55.0000
astatham-gatk	INDEL	*	*	*	99.3424	99.2404	99.4446	59.9126	341925	2617	341788	1909	1550	81.1943
ckim-gatk	INDEL	I1_5	*	*	99.3427	99.1491	99.5371	59.3239	149382	1282	149430	695	401	57.6978
hfeng-pmm2	SNP	ti	map_l100_m2_e1	het	99.3427	99.3508	99.3346	69.0698	30759	201	30752	206	16	7.7670
jmaeng-gatk	INDEL	I1_5	map_l100_m2_e0	homalt	99.3427	99.6234	99.0637	82.1345	529	2	529	5	4	80.0000
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3427	99.6095	99.0772	37.9144	18112	71	18145	169	3	1.7752
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3430	98.6945	100.0000	83.5150	378	5	378	0	0
jpowers-varprowl	SNP	*	map_l100_m2_e1	homalt	99.3431	99.0286	99.6597	66.2636	27526	270	27526	94	69	73.4043
raldana-dualsentieon	SNP	ti	map_l100_m2_e1	*	99.3433	99.3594	99.3272	64.7652	49168	317	49161	333	19	5.7057
gduggal-bwavard	SNP	ti	*	*	99.3434	99.0343	99.6545	21.4644	2065379	20139	2057255	7133	2188	30.6743
rpoplin-dv42	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.3435	99.1935	99.4939	70.5690	984	8	983	5	1	20.0000
ltrigg-rtg1	INDEL	D1_5	map_l150_m1_e0	homalt	99.3435	99.5614	99.1266	85.6156	227	1	227	2	2	100.0000
rpoplin-dv42	SNP	*	map_l150_m2_e0	homalt	99.3437	98.9743	99.7158	73.6127	11579	120	11579	33	32	96.9697
gduggal-bwafb	INDEL	I1_5	map_l100_m2_e0	homalt	99.3440	99.8117	98.8806	82.8095	530	1	530	6	4	66.6667
jpowers-varprowl	SNP	*	map_l100_m1_e0	homalt	99.3441	99.0075	99.6831	63.9191	26735	268	26735	85	65	76.4706
ckim-gatk	INDEL	D1_5	map_l100_m2_e0	homalt	99.3443	99.1817	99.5074	84.1571	606	5	606	3	2	66.6667
ckim-vqsr	INDEL	D1_5	map_l100_m2_e0	homalt	99.3443	99.1817	99.5074	84.1571	606	5	606	3	2	66.6667
jli-custom	INDEL	D1_5	map_l100_m2_e0	homalt	99.3443	99.1817	99.5074	82.7381	606	5	606	3	3	100.0000
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3449	98.6984	100.0000	53.9460	1744	23	1739	0	0
dgrover-gatk	SNP	ti	map_l150_m0_e0	homalt	99.3450	98.8772	99.8172	73.4053	2730	31	2730	5	4	80.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3451	99.1719	99.5189	81.7458	6826	57	6826	33	11	33.3333
egarrison-hhga	SNP	*	map_l100_m0_e0	*	99.3454	98.8977	99.7972	67.0353	32479	362	32480	66	33	50.0000
ckim-vqsr	SNP	ti	*	*	99.3455	98.7474	99.9510	21.8102	2059387	26124	2059330	1009	89	8.8206
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3457	98.8069	99.8904	75.6735	911	11	911	1	0	0.0000
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3457	98.6999	100.0000	30.6231	911	12	913	0	0
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3458	99.8122	98.8837	68.5948	1063	2	1063	12	12	100.0000
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.3458	99.4510	99.2408	86.4188	2355	13	2353	18	14	77.7778
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3464	100.0000	98.7013	68.4149	1065	0	1064	14	14	100.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3464	99.9061	98.7929	68.3700	1064	1	1064	13	13	100.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3464	99.1304	99.5633	66.6181	228	2	228	1	1	100.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3467	99.2253	99.4684	49.9176	11783	92	11787	63	54	85.7143
astatham-gatk	SNP	*	map_l150_m2_e0	homalt	99.3470	98.8375	99.8618	70.8404	11563	136	11563	16	13	81.2500
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.3474	98.7681	99.9335	54.7798	6013	75	6013	4	4	100.0000
rpoplin-dv42	INDEL	D1_5	map_l100_m2_e0	homalt	99.3475	99.6727	99.0244	83.2288	609	2	609	6	5	83.3333
jli-custom	SNP	*	map_l250_m1_e0	homalt	99.3477	98.9444	99.7544	84.2418	2437	26	2437	6	6	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3478	98.9177	99.7817	28.1005	457	5	457	1	1	100.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3478	99.3571	99.3386	42.1628	10663	69	10663	71	1	1.4085
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3478	98.9177	99.7817	27.8740	457	5	457	1	1	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3478	98.9177	99.7817	27.8740	457	5	457	1	1	100.0000
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3478	98.9177	99.7817	28.6604	457	5	457	1	1	100.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3479	98.8298	99.8715	53.0817	3885	46	3885	5	0	0.0000

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