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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1505 1506 1507 1508 1509 1510 1511 1512 1513 ... 1720 1721 » 75401-75450 / 86044 show all
rpoplin-dv42	INDEL	D1_5	map_l100_m1_e0	homalt	99.3266	99.6622	98.9933	82.4396	590	2	590	6	5	83.3333
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.3270	99.3199	99.3340	66.8350	3067	21	3132	21	9	42.8571
ckim-gatk	INDEL	D1_5	map_l125_m2_e1	homalt	99.3271	99.1935	99.4609	86.4599	369	3	369	2	2	100.0000
jli-custom	INDEL	D1_5	map_l125_m2_e1	homalt	99.3271	99.1935	99.4609	85.1719	369	3	369	2	2	100.0000
ckim-vqsr	INDEL	D1_5	map_l125_m2_e1	homalt	99.3271	99.1935	99.4609	86.4599	369	3	369	2	2	100.0000
gduggal-snapplat	SNP	*	func_cds	het	99.3276	99.2653	99.3900	36.7079	11079	82	11079	68	4	5.8824
ckim-gatk	INDEL	*	HG002complexvar	*	99.3276	99.0226	99.6345	58.1713	76186	752	76048	279	226	81.0036
gduggal-bwafb	INDEL	I1_5	map_l100_m1_e0	homalt	99.3276	99.8069	98.8528	81.3813	517	1	517	6	4	66.6667
bgallagher-sentieon	SNP	*	map_l250_m2_e0	homalt	99.3276	98.9948	99.6627	86.1668	2659	27	2659	9	7	77.7778
hfeng-pmm2	SNP	ti	map_l100_m0_e0	*	99.3277	99.4212	99.2343	69.9178	21645	126	21642	167	19	11.3772
rpoplin-dv42	SNP	*	map_l150_m1_e0	homalt	99.3277	98.9444	99.7139	71.2907	11154	119	11154	32	31	96.8750
dgrover-gatk	SNP	*	map_l125_m2_e0	*	99.3279	99.3194	99.3363	74.2156	46405	318	46399	310	69	22.2581
bgallagher-sentieon	SNP	ti	map_l125_m2_e0	*	99.3281	99.4316	99.2249	72.6504	30086	172	30082	235	42	17.8723
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3283	99.2191	99.4377	37.1644	18041	142	18038	102	2	1.9608
jli-custom	SNP	*	map_l125_m2_e0	*	99.3286	99.1032	99.5549	68.8474	46304	419	46301	207	67	32.3671
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3289	99.5281	99.1304	78.8666	4218	20	4218	37	6	16.2162
mlin-fermikit	INDEL	D1_5	func_cds	homalt	99.3289	100.0000	98.6667	21.0526	74	0	74	1	1	100.0000
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.3289	100.0000	98.6667	70.3557	5	0	74	1	1	100.0000
qzeng-custom	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.3290	99.4275	99.2308	69.0660	521	3	516	4	4	100.0000
hfeng-pmm1	SNP	tv	map_l150_m2_e0	*	99.3292	99.1193	99.5400	75.2398	11255	100	11253	52	14	26.9231
asubramanian-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3297	98.9174	99.7455	57.3296	10964	120	10972	28	3	10.7143
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.3302	98.8571	99.8079	61.2435	1038	12	1039	2	2	100.0000
hfeng-pmm3	SNP	ti	map_l150_m2_e1	het	99.3308	99.2393	99.4225	76.8259	12916	99	12912	75	8	10.6667
ltrigg-rtg1	INDEL	D1_5	map_l125_m2_e1	homalt	99.3310	99.4624	99.2000	83.9812	370	2	372	3	2	66.6667
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3312	99.2264	99.4362	88.4220	1411	11	1411	8	7	87.5000
astatham-gatk	SNP	*	map_l150_m1_e0	homalt	99.3312	98.8113	99.8566	68.4753	11139	134	11139	16	13	81.2500
jpowers-varprowl	SNP	tv	HG002complexvar	het	99.3313	98.8748	99.7919	23.6187	149035	1696	149155	311	60	19.2926
ckim-gatk	INDEL	*	func_cds	*	99.3314	99.7753	98.8914	54.2132	444	1	446	5	1	20.0000
astatham-gatk	SNP	tv	map_l150_m2_e1	homalt	99.3315	98.8389	99.8290	71.2267	4086	48	4086	7	5	71.4286
hfeng-pmm3	SNP	ti	map_l150_m2_e0	het	99.3316	99.2392	99.4243	76.7413	12783	98	12779	74	8	10.8108
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.3316	99.5905	99.0741	54.4458	2675	11	2675	25	0	0.0000
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3317	98.8017	99.8674	38.4766	11296	137	11293	15	3	20.0000
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.3320	99.2657	99.3984	79.0065	1487	11	1487	9	2	22.2222
hfeng-pmm3	INDEL	*	segdup	*	99.3329	99.0219	99.6459	93.8860	2531	25	2533	9	3	33.3333
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3331	98.7166	99.9574	29.1176	4692	61	4689	2	2	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.3332	99.5580	99.1095	50.6288	10361	46	10350	93	84	90.3226
bgallagher-sentieon	SNP	ti	map_l125_m2_e1	*	99.3333	99.4373	99.2295	72.6907	30397	172	30393	236	42	17.7966
gduggal-bwafb	SNP	*	map_l125_m0_e0	homalt	99.3333	98.7783	99.8945	72.5403	6630	82	6630	7	6	85.7143
hfeng-pmm1	SNP	tv	map_l150_m2_e1	*	99.3334	99.1219	99.5459	75.2491	11401	101	11399	52	14	26.9231
hfeng-pmm1	SNP	*	map_l150_m1_e0	*	99.3336	99.1016	99.5666	73.6726	30334	275	30328	132	37	28.0303
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.3336	98.6760	100.0000	74.6486	2385	32	2381	0	0
dgrover-gatk	SNP	*	map_l125_m2_e1	*	99.3336	99.3263	99.3409	74.2508	46884	318	46878	311	69	22.1865
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3337	99.5146	99.1536	70.9926	820	4	820	7	1	14.2857
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3339	99.0472	99.6223	38.0132	7381	71	7385	28	18	64.2857
rpoplin-dv42	INDEL	I1_5	HG002complexvar	het	99.3340	99.1643	99.5043	57.7801	18037	152	18065	90	80	88.8889
ckim-gatk	SNP	ti	HG002complexvar	homalt	99.3341	98.6902	99.9864	18.4846	190929	2534	190919	26	23	88.4615
jmaeng-gatk	SNP	ti	HG002compoundhet	het	99.3342	98.8953	99.7771	40.7782	9400	105	9400	21	17	80.9524
bgallagher-sentieon	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3343	99.9317	98.7440	74.3514	30740	21	30740	391	384	98.2097
ndellapenna-hhga	SNP	*	map_l250_m2_e1	homalt	99.3346	98.8595	99.8143	86.9517	2687	31	2687	5	5	100.0000
raldana-dualsentieon	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3348	99.0173	99.6544	63.3928	27406	272	27397	95	13	13.6842

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